Re: [R] empty files created with trellis xyplot jpeg device

2012-01-01 Thread R. Michael Weylandt
I'm guessing R FAQ 7.22: http://cran.r-project.org/doc/FAQ/R-FAQ.html The subtlety is that in an interactive session print is automatically called at the final evaluation of most everything, but you have to prompt it in interactive use (and depending on details, in some function calls) Michael

Re: [R] Is it possible to right align text in R graphics?

2012-01-01 Thread Tal Galili
Hi Duncan, Thank you for your reply. I am also using Win 7. And I would be surprised if this would be different in any OS. I guess the answer is that there is no way for making text in a graph in R be right-to-left. Thanks again, and happy new year, Tal Contact

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread peter dalgaard
On Jan 1, 2012, at 07:40 , Joshua Wiley wrote: If you just want a plot of the frequencies at each hour why not just call barplot on the output of table? Histograms create bins and count in those, which doesn't sound like what you're after. Exactly. If what you want is a barplot, make a

[R] R report generator (for Word)?

2012-01-01 Thread Michael
Happy New Year all! I am looking for a good solution for keeping record of my experiments - could you please help me? My work is about analysing data... My current work-flow: 1. Everyday my bosses give me some small steps/tasks for analysing data - which are parts of one bigger/whole project.

[R] looking for R software resource persons

2012-01-01 Thread Sridhar Gutam
dear all, i am looking for R software resources persons from India. Please reply. Thanks Regards Sridhar _ Sridhar Gutam PhD, ARS, PG Dip Patent Laws (NALSAR), IP Biotechnology (WIPO) Senior Scientist (Plant Physiology)

[R] bmp() shifts the image (Windows XP)

2012-01-01 Thread William Simpson
When using bmp() under Windows XP, I find that the saved image is a shifted version of the correct image. Try this: n-5 fn-01.bmp x-matrix(runif(n*n),nrow=n) image(x,col=gray(0:255/255),axes=F,frame.plot=F) bmp(filename = fn,width = n, height = n, units = px) par(mar=c(0,0,0,0),pty=s)

[R] R on Android

2012-01-01 Thread Federico J. Villatoro
Hello,I am new to this list. I have ben wondering if there is an app to run R on mobile devices? Specially android...Thanks in advance Federico -- Federico [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

Re: [R] mtrace function

2012-01-01 Thread Mark.Bravington
Thanks for passing that on, Uwe. There are two separate things here: - Uwe's problem is a bug: there is an experimental source-code-debugging feature in 'debug' that doesn't work properly yet (pending a change in the 'parser' package) and for some stupid reason I'd set the default to use

[R] rep() inside of lm()?

2012-01-01 Thread iliketurtles
HI all, I'm new to R. Say I have a multi-layered list called newlist. str(newlist) List of 2 $ :List of 5 ..$ : num [1:8088] NA 464 482 535 557 ... ..$ : num [1:8088, 1:2] NA 464 482 535 557 ... ..$ : num [1:8088, 1:3] NA 464 482 535 557 ... ..$ : num [1:8088, 1:4] NA 464

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread Aren Cambre
On Sun, Jan 1, 2012 at 5:29 AM, peter dalgaard pda...@gmail.com wrote: Exactly. If what you want is a barplot, make a barplot; histograms are for continuous data.   Just remember that you may need to set the levels explicitly in case of empty groups: barplot(table(factor(x,levels=0:23))).

Re: [R] R on Android

2012-01-01 Thread David Winsemius
On Jan 1, 2012, at 10:05 AM, Federico J. Villatoro wrote: Hello,I am new to this list. So new that you have not yet read the posting guide it appears. I have ben wondering if there is an app to run R on mobile devices? Specially android...Thanks in advance Quick answer: Not yet (as

Re: [R] R on Android

2012-01-01 Thread David Winsemius
On Jan 1, 2012, at 11:07 AM, David Winsemius wrote: On Jan 1, 2012, at 10:05 AM, Federico J. Villatoro wrote: Hello,I am new to this list. So new that you have not yet read the posting guide it appears. I have ben wondering if there is an app to run R on mobile devices? Specially

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread Joshua Wiley
Hi Aren, I was busy thinking about how to make what you wanted, and I missed that you were working with hours from a day. That being the case, you may think about a circular graph. The attached plots show two different ways of working with the same data. Cheers, Josh set.seed(10) x -

Re: [R] rep() inside of lm()?

2012-01-01 Thread David Winsemius
On Jan 1, 2012, at 9:13 AM, iliketurtles wrote: HI all, I'm new to R. Say I have a multi-layered list called newlist. Which you have not provided in a form that lends itself well to constructing worked examples. str(newlist) List of 2 $ :List of 5 ..$ : num [1:8088] NA

Re: [R] R report generator (for Word)?

2012-01-01 Thread MK
Have you seen r2wd? http://www.r-bloggers.com/exporting-r-output-to-ms-word-with-r2wd-an-example-session/ On Jan 1, 2012, at 10:50 AM, Michael comtech@gmail.com wrote: Happy New Year all! I am looking for a good solution for keeping record of my experiments - could you please help

Re: [R] R report generator (for Word)?

2012-01-01 Thread cougar711
I am not at my desk but you might search the CRAN web site for reproducible research. Respectfully, Frank Lawrence -Original Message- From: Michael comtech@gmail.com Sender: r-help-bounces@r-project.orgDate: Sun, 1 Jan 2012 09:50:24 To: r-helpr-h...@stat.math.ethz.ch Subject: [R]

Re: [R] rep() inside of lm()?

2012-01-01 Thread Joshua Wiley
Hi Isaac, This is my best understanding of what you are after. A small worked example would have been helpful (even if you had to manually write the code, we would at least have a 'gold standard' for what we were trying to automate to take lists of arbitrary size). This is not necessarily an

[R] what's the command in R to completely clear the state of the console(including clearing up libraries, etc?)

2012-01-01 Thread Michael
Are there commands that can do more complete clean-up than rm(list=ls(all=T))? My understanding is that one only clears the variables... not functions/packages, etc... Thanks a lot! [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] what's the command in R to completely clear the state of the console(including clearing up libraries, etc?)

2012-01-01 Thread David Winsemius
On Jan 1, 2012, at 12:43 PM, Michael wrote: Are there commands that can do more complete clean-up than rm(list=ls(all=T))? My understanding is that one only clears the variables... not functions/packages, etc... Not exactly true. rm should remove any function you defined in your current

Re: [R] bmp() shifts the image (Windows XP)

2012-01-01 Thread Duncan Murdoch
On 12-01-01 9:05 AM, William Simpson wrote: When using bmp() under Windows XP, I find that the saved image is a shifted version of the correct image. Try this: The image() function isn't designed to be able to do pixel-level addressing, so it's not too surprising that some rounding error

Re: [R] what's the command in R to completely clear the state of the console(including clearing up libraries, etc?)

2012-01-01 Thread Hadley Wickham
My understanding is that one only clears the variables... not functions/packages, etc... Not exactly true. rm should remove any function you defined in your current session. You need to look at ?unloadNamespace ?detach ...  in order to remove loaded packages. And read the caveats there.

Re: [R] R on Android

2012-01-01 Thread Ken Hutchison
If the phone is rooted one could hypothetically install from Debian repositories where R is represented very comprehensively. I surmise this is more trouble than it's worth in a major way. If stranded on a desert island and getting R fully functional on Droid would save you, I'd advise looking

Re: [R] what's the command in R to completely clear the state of the console(including clearing up libraries, etc?)

2012-01-01 Thread Michael
okay thanks is there a way to programatically restart a new Console session? On Sun, Jan 1, 2012 at 12:55 PM, Hadley Wickham had...@rice.edu wrote: My understanding is that one only clears the variables... not functions/packages, etc... Not exactly true. rm should remove any function you

Re: [R] Is it possible to right align text in R graphics?

2012-01-01 Thread Jeff Newmiller
I don't know any language other than English, much less one written right-to-left, but a quick search shows that the RGtk2 package includes some support for such things. My gut reaction is that right-to-left support would be highly device dependent, and since devices often interact closely

[R] R on Android

2012-01-01 Thread Timothy Jurka
Hi Frederico, This may not be what you're looking for, but we setup RStudio Server ( http://www.rstudio.org/ ) on a Linux box and access it from our tablets through a web browser. Best, Tim -- Timothy P. Jurka Ph.D. Student Department of Political Science University of California, Davis

Re: [R] R on Android

2012-01-01 Thread Christos Argyropoulos
It should be noted that there is an Octave/Matlab clone for Android out there (addi). It is not far fetched that someone given enough time, determination, a rooted phone (LG phones are better for that, stay away from SE if you want a rooted device) and Wilson :) could deploy R in the droid!

Re: [R] Is it possible to right align text in R graphics?

2012-01-01 Thread Richard M. Heiberger
Tal, Plese look at this thread https://stat.ethz.ch/pipermail/r-help/2011-October/292786.html right justify right-axis tick values in lattice and see if the function provided by David Winsemius will work for you. I included it in the HH package as HH:::panel.axis.right Rich On Sun, Jan 1, 2012

Re: [R] R report generator (for Word)?

2012-01-01 Thread Joshua Wiley
Hi Michael, I like Sweave and LaTeX, but I can appreciate the difficulty using it with collaborators. What about something similar using HTML? Certainly integrates to any webpages nicely. There are two packages I think do this nicely, one is the R2HTML package (on CRAN). Another one that is

Re: [R] Contingency tables example

2012-01-01 Thread Michael Friendly
On 12/28/2011 1:17 PM, David Winsemius wrote: Along those lines, Thompson's R accompaniment to Agresti's text on Categorical Data Analysis is simply wonderful: https://home.comcast.net/~lthompson221/SplusDiscrete.PDF It's not surprising that Agresti recommends it on the book's homepage:

Re: [R] R report generator (for Word)?

2012-01-01 Thread Richard M. Heiberger
Look at the SWord package. It is available from rcom.univie.ac.at. It is the integration of R and Word similar to RExcel at the same site. Rich On Sun, Jan 1, 2012 at 3:31 PM, Joshua Wiley jwiley.ps...@gmail.com wrote: Hi Michael, I like Sweave and LaTeX, but I can appreciate the difficulty

[R] How to pass in a list of variables as an argument to a function?

2012-01-01 Thread Randall Goodwin
Hello, I have some code that currently works fine and I am endeavoring to convert the major pieces of it into functions. This involves taking hard coded names of variables that are used in various places and figuring out how to abstract them out into functions where the arguments (i.e. a list of

[R] matrix position to list of coordinates

2012-01-01 Thread Ana
How can I extract a list of the positions in the matrix? A=matrix(1:8, nrow=2,ncol=4) A [,1] [,2] [,3] [,4] [1,]1357 [2,]2468 Something like this pos.A 1 1 1 2 1 3 1 4 2 1 2 2 2 3 2 4 __ R-help@r-project.org

Re: [R] matrix position to list of coordinates

2012-01-01 Thread Sarah Goslee
Here's one way: data.frame(rowID=as.vector(row(A)), colID=as.vector(col(A)), A=as.vector(A)) rowID colID A 1 1 1 1 2 2 1 2 3 1 2 3 4 2 2 4 5 1 3 5 6 2 3 6 7 1 4 7 8 2 4 8 You can sort that as desired. Sarah On Sun, Jan 1, 2012

Re: [R] empty files created with trellis xyplot jpeg device

2012-01-01 Thread Mike Dahman
Thanks Michael. That did the trick. Despite googling most of the day yesterday, I didn't quite have the right search string to find that one. Almost feels like the answer was hiding in plain sight, now that you point me to it. I added some code to save the xyplots to a variable and then print it

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread Aren Cambre
This is helpful, although I can't seem to adapt it to my own data. If I run your sample as is, I do get the nice graphs. However, this doesn't work: (Assume you already have a data frame dallas with 2057980 rows. It has column offense_hour, and each row has a value between 0 and 23, inclusive.)

Re: [R] How to pass in a list of variables as an argument to a function?

2012-01-01 Thread Joshua Wiley
Hi Randall, This will do it. There may be more elegant ways. Formula methods are just handy front ends (e.g., stats:::aggregate.formula), that end up dispatching to other methods usually. It is easy to pass a character vector to extractor functions like `[`() so with a bit more typing, you can

Re: [R] matrix position to list of coordinates

2012-01-01 Thread Willi Richert
Hi Ana, most probably this is one of the more ugly solutions: d=dim(A) d [1] 2 4 cbind(rep(1:d[1], each=d[2]), rep(1:d[2], d[1])) [,1] [,2] [1,]11 [2,]12 [3,]13 [4,]14 [5,]21 [6,]22 [7,]23 [8,]24 Thanks, wr * Ana

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread Joshua Wiley
Sorry, that was probably a really confusing example...too many xs floating around. set.seed(10) rawdata - sample(0:23, 1, TRUE, prob = sin(0:23)+1) ## do theis step first for your data tableddata - as.data.frame(table(rawdata)) ## use these names in ggplot colnames(tableddata)

[R] Lattice: Understanding How Points Connected by Lines

2012-01-01 Thread Rich Shepard
A data frame has one factor, one date, and one numeric column. When I plot these using the default pch of the open circle (first attachment), xyplot(TDS ~ sampdate | she.s, data = sheep.cast, main = 'TDS in Sheep Creek', ylab = 'Concentration (mg/L)', xlab = 'Time') I see the higher

Re: [R] Lattice: Understanding How Points Connected by Lines

2012-01-01 Thread Rich Shepard
On Sun, 1 Jan 2012, Rich Shepard wrote: Where do I start to look for the reason for this behavior? Perhaps the dates are not in sequence? So I need to use zoo to order the dates sequentially? Rich __ R-help@r-project.org mailing list

Re: [R] Lattice: Understanding How Points Connected by Lines

2012-01-01 Thread David Winsemius
On Jan 1, 2012, at 5:50 PM, Rich Shepard wrote: A data frame has one factor, one date, and one numeric column. When I plot these using the default pch of the open circle (first attachment), xyplot(TDS ~ sampdate | she.s, data = sheep.cast, main = 'TDS in Sheep Creek', ylab = 'Concentration

Re: [R] rep() inside of lm()?

2012-01-01 Thread iliketurtles
Josh, you've solved the problem, fantastic. Thanks for as.formula() David, that will be of great use in my work. Next time I'll provide better examples. Thanks for your help all. - Isaac Research Assistant Quantitative Finance Faculty, UTS -- View this message in context:

Re: [R] Histogram omitting/collapsing groups

2012-01-01 Thread Aren Cambre
Thanks. That did it! And I get it now--in your original example, aes(x = x, y = Freq), x refers to the column name in as.data.frame(table(x)), not the x vector(?) you created. Aren On Sun, Jan 1, 2012 at 4:44 PM, Joshua Wiley jwiley.ps...@gmail.com wrote: Sorry, that was probably a really

Re: [R] R report generator (for Word)?

2012-01-01 Thread G. Jay Kerns
Dear Michael, On Sun, Jan 1, 2012 at 10:50 AM, Michael comtech@gmail.com wrote: Happy New Year all! [snip] PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Nobody's yet mentioned that the

[R] Reading mcmc/coda into a big.matrix efficiently

2012-01-01 Thread Guy W Cole
I'm trying to read CODA/mcmc files (see the coda package), as generated by jags/WinBUGS/OpenBUGS, into a big.matrix.I can't load the whole mcmc object produced by read.coda() into memory since I'm using a laptop for this analysis (currently I'm unfunded). Right now I'm doing it by

Re: [R] gam() (in mgcv) with multiple interactions

2012-01-01 Thread yanch1985
Dear Simon, I have the same problem. I understand te(a), te(b) are nested in te(a,b) according to your paper on tensor product. I have no enough data to perform te(a,b,d) and only care the interactions a*b and a*d, so I did y=te(a,b)+te(a,d). The resutl is good. I am wondering if this is the

[R] How to get cov matrix of regression parameters in GEE using 'geese' or 'geeglm''

2012-01-01 Thread Niroshan
Dear R users, I fitted a GEE model using the function 'geese' (or 'geeglm') with user defined correlation matrix. I want to get the var-cov matrix of the regression coefficients. But the output provides only limited information. I would be very much thankful if you could kindly let me know

Re: [R] Reading large sparse arff files into R

2012-01-01 Thread andy1234
Hi folks, Any ideas on this? This does sound like a fairly common situation - reading in large data file into R? Thanks. Andy -- View this message in context: http://r.789695.n4.nabble.com/Reading-large-sparse-arff-files-into-R-tp4249409p4252393.html Sent from the R help mailing list archive

Re: [R] R report generator (for Word)?

2012-01-01 Thread John
On Sun, 1 Jan 2012 09:50:24 -0600 Michael comtech@gmail.com wrote: Happy New Year all! I am looking for a good solution for keeping record of my experiments - could you please help me? If you are working from scripts, which is a very good way to standardize procedures as a work flow

[R] rainbow function

2012-01-01 Thread 王琦
hello: I am trying to use R to draw a 3D picture, then color the picture according to the value of z , how could I do this job? this is my exalple x-y-seq(-50,50,2) m-function(x,y) x^3+y^3-x^2*y-x*y^2 z-outer(x,y,m) persp(x,y,z,theta=-60,phi=30) I want to draw the Zmax in red and Zmin in

Re: [R] rainbow function

2012-01-01 Thread David Winsemius
On Jan 2, 2012, at 1:31 AM, 王琦 wrote: hello: I am trying to use R to draw a 3D picture, then color the picture according to the value of z , how could I do this job? this is my exalple x-y-seq(-50,50,2) m-function(x,y) x^3+y^3-x^2*y-x*y^2 z-outer(x,y,m) persp(x,y,z,theta=-60,phi=30) I