Re: [R] repeatedrepeated measures in ANOVA or mixed model

2010-11-10 Thread Mike Marchywka
Date: Tue, 9 Nov 2010 18:25:18 -0800 From: djmu...@gmail.com To: paul.rhee...@up.ac.za CC: r-help@r-project.org Subject: Re: [R] repeatedrepeated measures in ANOVA or mixed model Hi: This sounds like a 'doubly repeated measures problem'. Are

Re: [R] Parsing txt file

2010-11-10 Thread Mike Marchywka
From: santosh.srini...@gmail.com To: karthick.laksh...@gmail.com; r-help@r-project.org Date: Wed, 10 Nov 2010 16:00:26 +0530 Subject: Re: [R] Parsing txt file You could use the following to achieve your objective. To start with ?readLines

Re: [R] Parallel code runs slower!

2010-11-10 Thread Mike Marchywka
From: santosh.srini...@gmail.com To: r-help@r-project.org Date: Wed, 10 Nov 2010 19:37:29 +0530 [[elided Hotmail spam]] My parallel code is running slower than my non-parallel code! Can someone pls advise what am I doing wrong here? I cited

Re: [R] the formula of quantile regression for panel data, which is correct?

2010-11-09 Thread Mike Marchywka
Date: Tue, 9 Nov 2010 00:41:26 -0800 From: 523541...@qq.com To: r-help@r-project.org Subject: [R] the formula of quantile regression for panel data, which is correct? Hi,everyone I have some trouble in understanding the formula.

Re: [R] try (nls stops unexpectedly because of chol2inv error

2010-11-08 Thread Mike Marchywka
Date: Mon, 8 Nov 2010 06:18:49 -0800 From: monte.shaf...@gmail.com To: r-help@r-project.org Subject: [R] try (nls stops unexpectedly because of chol2inv error Hi, I am running simulations that does multiple comparisons to control. For each

Re: [R] can't load nlme on windoze 7

2010-11-07 Thread Mike Marchywka
) -- On Sun, Nov 7, 2010 at 3:39 AM, Mike Marchywka wrote: Hi, I've got a problem that sounds a lot like this, http://r.789695.n4.nabble.com/Re-R-R-2-12-0-hangs-while-loading-RGtk2-on-FreeBSD-td3005929

Re: [R] can't load nlme on windoze 7

2010-11-07 Thread Mike Marchywka
| 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) -- On Sun, Nov 7, 2010 at 3:39 AM, Mike Marchywka wrote: Hi

Re: [R] can't load nlme on windoze 7

2010-11-07 Thread Mike Marchywka
\bin\junk\..\R.exe l l -0.dl ll 1-1-0.dll 1-0.dll Best, Uwe Ligges On 07.11.2010 14:37, Mike Marchywka wrote: On further investgiation, I clicked on the R picture using windoze explorer and ran as admin. First, I got a prompt saying

Re: [R] can't load nlme on windoze 7

2010-11-07 Thread Mike Marchywka
just try a reinstall. $ cygcheck ../R.exe C:\pfs\R\R-2.11.1\bin\junk\..\R.exe  Stupid hotmail or spam filter seems to have wrecked this... l l -0.dl ll 1-1-0.dll 1-0.dll Best, Uwe Ligges On 07.11.2010 14:37, Mike Marchywka

Re: [R] can't load nlme on windoze 7

2010-11-07 Thread Mike Marchywka
Date: Sun, 7 Nov 2010 20:57:19 +0100 From: lig...@statistik.tu-dortmund.de To: marchy...@hotmail.com CC: r-help@r-project.org Subject: Re: [R] can't load nlme on windoze 7 Trying R CMD INSTALL ...zip said that  unpackPkgZip was missing so

Re: [R] anova(lme.model)

2010-11-06 Thread Mike Marchywka
51.86699 .0001 Height 1 163 30.08090 .0001 Diversity:Height 1 163 12.57603 0.0005 -- Bert Gunter Genentech Nonclinical Biostatistics Mike Marchywka | V.P. Technology 415-264-8477 marchy...@phluant.com Online Advertising and Analytics for Mobile http

[R] can't load nlme on windoze 7

2010-11-06 Thread Mike Marchywka
in ntdll!LdrFindResource_U ()    from /cygdrive/c/Windows/system32/ntdll.dll (gdb) Mike Marchywka | V.P. Technology 415-264-8477 marchy...@phluant.com Online Advertising and Analytics for Mobile http://www.phluant.com

Re: [R] NFFT on a Zoo?

2010-11-05 Thread Mike Marchywka
PM, Mike Marchywka wrote: From: ggrothendi...@gmail.com Date: Wed, 3 Nov 2010 15:27:13 -0400 To: flym...@gmail.com CC: r-help@r-project.org; rpy-l...@lists.sourceforge.net Subject: Re: [R] NFFT on a Zoo? On Wed, Nov 3, 2010 at 2:59 PM, Bob

Re: [R] How to extract particular rows and column from a table

2010-11-05 Thread Mike Rennie
colnames(aa)-c(cola, colb) aa #select your items of interest... ab-aa$colb[aa$cola==a] ab HTH, Mike On Fri, Nov 5, 2010 at 11:26 AM, Mauluda Akhtar maulud...@gmail.com wrote: Hello, I'm a new user of R. I've a very big table like the following structure (suppose the variable name with aa

Re: [R] Converting Strings to Variable names

2010-11-04 Thread Mike Rennie
. HTH, Mike This code only stores last sample data as CombinedSample gets overwritten every time. Using CombinedSamples[k] or CombinedSamples[k,] causes dimension related errors as each Sample has several rows and not just 24. So how can I assign data of all 24 samples to CombinedSamples

Re: [R] Sorting data from one column with strings

2010-11-04 Thread Mike Rennie
, byrow=TRUE) results.mat HTH, Mike On Thu, Nov 4, 2010 at 7:28 AM, Ramsvatn Silje silje.ramsv...@uit.nowrote: Hello, I have tried to find this out some other way, but unsuccessful I have to try this list. I assume this should be quite simple. I have a dataset with 4 columns, Sample_no

Re: [R] NFFT on a Zoo?

2010-11-03 Thread Mike Marchywka
From: ggrothendi...@gmail.com Date: Wed, 3 Nov 2010 15:27:13 -0400 To: flym...@gmail.com CC: r-help@r-project.org; rpy-l...@lists.sourceforge.net Subject: Re: [R] NFFT on a Zoo? On Wed, Nov 3, 2010 at 2:59 PM, Bob Cunningham wrote: I have an

Re: [R] question in using nlme and lme4 for unbalanced data

2010-11-02 Thread Mike Marchywka
Date: Mon, 1 Nov 2010 17:38:54 -0700 From: djmu...@gmail.com To: cy...@email.arizona.edu CC: r-help@r-project.org Subject: Re: [R] question in using nlme and lme4 for unbalanced data Hi: On Mon, Nov 1, 2010 at 3:59 PM, Chi Yuan wrote:

Re: [R] Odp: connecting points into a smooth curve

2010-11-01 Thread Mike Marchywka
To: kai...@berkeley.edu From: petr.pi...@precheza.cz Date: Mon, 1 Nov 2010 11:50:17 +0100 CC: r-help@r-project.org Subject: [R] Odp: connecting points into a smooth curve Hi r-help-boun...@r-project.org napsal dne 01.11.2010 07:18:47: If

Re: [R] Odp: connecting points into a smooth curve

2010-11-01 Thread Mike Marchywka
  Doing much of anything meaningful with 5 points would probably require a model as the other poster suggested- your model would need to be solved depending on its particulars. You sometimes see these kinds of wild interpolation issues with the drawing programs and free-form

Re: [R] biglm: how it handles large data set?

2010-11-01 Thread Mike Marchywka
Date: Sun, 31 Oct 2010 00:22:12 -0700 From: tim@netzero.net To: r-help@r-project.org Subject: [R] biglm: how it handles large data set? I am trying to figure out why 'biglm' can handle large data set... According to the R document -

Re: [R] runtime on ising model

2010-10-28 Thread Mike Marchywka
Date: Thu, 28 Oct 2010 09:58:40 -0700 From: wdun...@tibco.com To: dwinsem...@comcast.net; mike...@gmail.com CC: r-help@r-project.org Subject: Re: [R] runtime on ising model -Original Message- From: r-help-boun...@r-project.org

Re: [R] Time series data with dropouts/gaps

2010-10-26 Thread Mike Marchywka
From: ggrothendi...@gmail.com Date: Tue, 26 Oct 2010 00:37:05 -0400 To: flym...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Time series data with dropouts/gaps On Tue, Oct 26, 2010 at 12:28 AM, Bob Cunningham wrote: I have

Re: [R] runtime on ising model

2010-10-26 Thread Mike Marchywka
Date: Tue, 26 Oct 2010 12:53:14 -0400 From: mike...@gmail.com To: j...@bitwrit.com.au CC: r-help@r-project.org Subject: Re: [R] runtime on ising model I have an update on where the issue is coming from. I commented out the code for pos[k+1

Re: [R] .R file

2010-10-25 Thread Mike Marchywka
All three of these editors are external to R but have the capability of sending code from the editor to the console. All of them are good and have loyal user bases. Notepad++ is another option; but you have to copy/paste code to R - I mention it because it has syntax highlighting and is

Re: [R] How long does skipping in read.table take

2010-10-22 Thread Mike Marchywka
for example can isolate line ranges. In the past I've crated indexes of line offsets and then used perl for random access but not sure how that would work with R. Thank you! Thank google. Mike Marchywka | V.P. Technology 415-264-8477 marchy...@phluant.com Online Advertising and Analytics

Re: [R] How long does skipping in read.table take

2010-10-22 Thread Mike Marchywka
Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com Mike Marchywka | V.P. Technology 415-264-8477 marchy...@phluant.com Online Advertising and Analytics for Mobile http://www.phluant.com

Re: [R] comparing two data files

2010-10-19 Thread Mike Marchywka
From: nicol...@buffalo.edu Date: Tue, 19 Oct 2010 18:23:27 -0400 To: r-help@r-project.org Subject: [R] comparing two data files I have 2 large data files that I need to compare and find the differences between data file x and data file y in order

Re: [R] Sine function fitting

2010-10-18 Thread Mike Marchywka
Date: Mon, 18 Oct 2010 05:46:14 -0700 From: a...@walla.co.il To: r-help@r-project.org Subject: [R] Sine function fitting Hi, Is there a package to perform a sine function fitting to XY data? Since no one replied AFAIK, are you asking about 

Re: [R] Drop matching lines from readLines

2010-10-14 Thread Mike Marchywka
From: santosh.srini...@gmail.com To: r-help@r-project.org Date: Thu, 14 Oct 2010 11:27:57 +0530 Subject: [R] Drop matching lines from readLines Dear R-group, I have some noise in my text file (coding issues!) ... I imported a 200 MB text file

Re: [R] running a long R process on Linux using putty - best practice to disconnect

2010-10-14 Thread Mike Marchywka
Date: Thu, 14 Oct 2010 18:07:02 +0200 From: martin.to...@geo.uzh.ch To: r-help@r-project.org Subject: [R] running a long R process on Linux using putty - best practice to disconnect Dear all, I am sure this has been solved before, googling

Re: [R] [OT] (slightly) - OpenOffice Calc and text files

2010-10-13 Thread Mike Marchywka
From: dwinsem...@comcast.net To: bsch...@anest.ufl.edu Date: Wed, 13 Oct 2010 14:52:21 -0400 CC: r-help@r-project.org Subject: Re: [R] [OT] (slightly) - OpenOffice Calc and text files On Oct 13, 2010, at 1:13 PM, Schwab,Wilhelm K wrote: Hello

Re: [R] Slow reading multiple tick data files into list of dataframes

2010-10-11 Thread Mike Marchywka
Date: Mon, 11 Oct 2010 14:39:54 -0700 From: aqua...@gmail.com To: r-help@r-project.org Subject: [R] Slow reading multiple tick data files into list of dataframes [...] Is there a better/quicker or more R way of doing this ? While there may be an

Re: [R] Memory management in R

2010-10-10 Thread Mike Marchywka
Date: Sun, 10 Oct 2010 15:27:11 +0200 From: lorenzo.ise...@gmail.com To: dwinsem...@comcast.net CC: r-help@r-project.org Subject: Re: [R] Memory management in R I already offered the Biostrings package. It provides more robust methods for

Re: [R] R CMD SHLIB changes function name when compiling

2010-10-08 Thread Mike Marchywka
Date: Sat, 9 Oct 2010 01:21:47 +1030 From: stephen.peder...@adelaide.edu.au To: rip...@stats.ox.ac.uk CC: r-help@r-project.org Subject: Re: [R] R CMD SHLIB changes function name when compiling I think I should also add that I have compiled R

Re: [R] Memory management in R

2010-10-08 Thread Mike Marchywka
Date: Fri, 8 Oct 2010 13:30:59 -0400 From: jholt...@gmail.com To: lorenzo.ise...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Memory management in R More specificity: how long is the string, what is the pattern you are matching against?

Re: [R] Memory management in R

2010-10-08 Thread Mike Marchywka
From: dwinsem...@comcast.net To: lorenzo.ise...@gmail.com Date: Fri, 8 Oct 2010 19:30:45 -0400 CC: r-help@r-project.org Subject: Re: [R] Memory management in R On Oct 8, 2010, at 6:42 PM, Lorenzo Isella wrote: Please find below the R

Re: [R] SVM functions

2010-10-06 Thread Mike Marchywka
this, Thank you. - - - - - - Mike Marchywka | V.P. Technology 415-264-8477 marchy...@phluant.com Online Advertising and Analytics for Mobile __ R-help@r-project.org mailing list https://stat.ethz.ch

Re: [R] read columns of quoted numbers as factors

2010-10-05 Thread Mike Marchywka
From: pda...@gmail.com Date: Tue, 5 Oct 2010 13:25:52 +0200 To: j_hirsch...@yahoo.com CC: r-help@r-project.org Subject: Re: [R] read columns of quoted numbers as factors On Oct 4, 2010, at 18:39 , james hirschorn wrote: Suppose I have a data

Re: [R] R-help

2010-10-05 Thread Mike Marchywka
Date: Tue, 5 Oct 2010 08:18:10 -0700 From: djmu...@gmail.com To: tott...@yahoo.com CC: r-help@r-project.org Subject: Re: [R] R-help Hi: This problem is a useful lesson in the power of vectorizing calculations in R. A remanufacturing of

Re: [R] binary tree construction in R

2010-10-05 Thread Mike Marchywka
Date: Tue, 5 Oct 2010 14:57:40 -0700 From: matl...@cs.ucdavis.edu To: r-help@r-project.org Subject: Re: [R] binary tree construction in R MK wrote: Hi all, I'm very new to R and I'm trying to construct a threaded binary tree using

Re: [R] binary tree construction in R

2010-10-05 Thread Mike Marchywka
Is there a trick to posting links here or is wikipedia blocked? I see in my sent folder that I included this wikipedia link on threaded b-trees but it didn't show up in the mail i got back from the list? Sorry, I'm new to this list :) http:// en.wikipedia.org /wiki/Threaded_binary_tree

Re: [R] trouble with RODBC -- chopping off part of column names

2010-10-04 Thread Mike Williamson
! Mike *OS information: *Linux 2.6.18-8.1.15.el5 #1 SMP Mon Oct 22 08:32:28 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux *DB info: *Microsoft SQL Server Management Studio10.0.2531.0 Microsoft Data Access Components (MDAC) 6.1.7600.16385 Microsoft MSXML3.0

Re: [R] Output Graphics GIF

2010-10-03 Thread Mike Marchywka
Date: Sat, 2 Oct 2010 23:59:50 -0300 From: nilzabar...@gmail.com To: tal.gal...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Output Graphics GIF On Mon, Sep 27, 2010 at 11:31 AM, Tal Galili wrote: I am guessing you are saving the plot

Re: [R] tyring to save plots using windoze 7 and cygwin

2010-10-03 Thread Mike Marchywka
Date: Sat, 2 Oct 2010 16:35:03 -0700 Subject: Re: [R] tyring to save plots using windoze 7 and cygwin From: jwiley.psych gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org Hi Mike, sessionInfo() R version 2.11.1 (2010-05-31

[R] tyring to save plots using windoze 7 and cygwin

2010-10-02 Thread Mike Marchywka
() savePlot(./auto_hit_rate.pdf,type=pdf) q() Now apparently R does save the plot in a default file Rplots.pdf which is just fine for my immediate needs but this may have limitations for future usages. Just curious to know what other may have gotten to work or not work. Thanks. - - - - - - Mike

[R] trouble with RODBC -- chopping off part of column names

2010-10-01 Thread Mike Williamson
can't really get around this because I cannot simply query all of the columns, the data set would become too large. Thanks! Mike Telescopes and bathyscaphes and sonar probes of Scottish

[R] pairs and mfrow

2010-09-27 Thread Mike Harwood
). par(mfrow=c(2,1)) pairs(b2007, main=6/2000 - 12/2006) pairs(a2007, main=1/2007 - 06/2009) Thanks in advance! Mike [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

Re: [R] Plotting densities

2010-09-23 Thread Mike Rennie
. Mike On Thu, Sep 23, 2010 at 8:10 AM, Ralf B ralf.bie...@gmail.com wrote: Hi group, I am currently plotting two densities using the following code: x1 - c(1,2,1,3,5,6,6,7,7,8) x2 - c(1,2,1,3,5,6,5,7) plot(density(x1, na.rm = TRUE)) polygon(density(x2, na.rm = TRUE), border=blue) However, I

Re: [R] merging multiple data frames

2010-09-23 Thread Mike Rennie
First, you might want to start by generating a new column to identify your 'pdf and bdf or whatever once it's merged. For the merging, see ?merge But as someone's already pointed out, it's not clear what you are trying to merge by. Also, as your example calculations show, you don't need to

Re: [R] plotting multiple animal tracks against Date/Time

2010-09-23 Thread Mike Rennie
description, I've never used it)? If so, see ?par for details, specifically mfrow, mfcol. By doing it with calls to par(), I think you'll have more control over the appearance of the plot than with stackplot(). Mike On Thu, Sep 23, 2010 at 8:50 AM, Struve, Juliane j.str...@imperial.ac.ukwrote

Re: [R] Extracting bins and frequencies from frequency table

2010-09-22 Thread Mike Rennie
Hi Ralf try hist() obl-hist(x1, plot=FALSE) it returns midpoints and their respective frequencies. You can specify the breakpoints as well. ?hist for details. Mike On Wed, Sep 22, 2010 at 1:44 PM, Ralf B ralf.bie...@gmail.com wrote: Dear R users, I would like to great a frequency table

[R] [R-pkgs] ez version 2.0

2010-09-01 Thread Mike Lawrence
of the plot facets. - see changelog for further changes Enjoy! Mike -- Mike Lawrence Graduate Student Department of Psychology Dalhousie University Looking to arrange a meeting? Check my public calendar: http://tr.im/mikes_public_calendar ~ Certainty is folly... I think

Re: [R] Odp: Finding pairs

2010-08-25 Thread Mike Rhodes
of you for giving a patient reading to my query and for reverting back earlier. Thanks once again. With warmest regards Mike --- On Wed, 25/8/10, Petr PIKAL petr.pi...@precheza.cz wrote: From: Petr PIKAL petr.pi...@precheza.cz Subject: Odp: [R] Finding pairs To: Mike Rhodes mike_simpso

Re: [R] Odp: Finding pairs

2010-08-25 Thread Mike Rhodes
. Regards Mike --- On Wed, 25/8/10, Petr PIKAL petr.pi...@precheza.cz wrote: From: Petr PIKAL petr.pi...@precheza.cz Subject: Re: [R] Odp: Finding pairs To: Mike Rhodes mike_simpso...@yahoo.co.uk Cc: r-help@r-project.org Date: Wednesday, 25 August, 2010, 9:01 Hm r-help-boun...@r-project.org

[R] odd behavior of summary function

2010-08-24 Thread Mike Williamson
). But taking 25% 75% of the sum of the 2 also seems reasonable. Either way, summary is calculating the wrong number, and most disturbing is that it mis-calculates the max. Regards, Mike Telescopes

[R] Finding pairs

2010-08-24 Thread Mike Rhodes
.. I understand I should be writing some R code to begin with which I had tried also but as of now I am helpless. Please guide me. Mike [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch

[R] some helpful tips on using RODBC

2010-08-13 Thread Mike Williamson
!! Regards, Mike db.populate - function(dataSet=NULL, dbTable=NULL

[R] compare gam fits

2010-08-05 Thread Mike Lawrence
to it make this an inappropriate concern? Cheers, Mike -- Mike Lawrence Graduate Student Department of Psychology Dalhousie University Looking to arrange a meeting? Check my public calendar: http://tr.im/mikes_public_calendar ~ Certainty is folly... I think

[R] ggplot2 histograms... a subtle error found

2010-07-28 Thread Mike Williamson
-help? Hadley, if you're interested, would you like me to send you the data directly to you? Regards, Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse

[R] question regarding varImpPlot results vs. model$importance data on package RandomForest

2010-07-13 Thread Mike Williamson
or the $importance section. Which should I trust more, especially when they disagree appreciably? Thanks! Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge

Re: [R] anyone know why package RandomForest na.roughfix is so slow??

2010-07-01 Thread Mike Williamson
'. Regards, Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained with abstract phase-space maps, Some x-ray slides, a music score, Minard's Napoleanic war: The most exciting

Re: [R] anyone know why package RandomForest na.roughfix is so slow??

2010-07-01 Thread Mike Williamson
above took 16 seconds. Regards, Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained with abstract phase-space maps, Some x-ray slides, a music score

Re: [R] anyone know why package RandomForest na.roughfix is so slow??

2010-07-01 Thread Mike Williamson
. :) Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained with abstract phase-space maps, Some x-ray slides, a music score, Minard's Napoleanic war: The most exciting frontier is charting what's already here. -- xkcd -- Help protect

[R] anyone know why package RandomForest na.roughfix is so slow??

2010-06-30 Thread Mike Williamson
data sets, so cleaning the prediction data set simply takes much longer.) If so, any ideas how to speed this up? Thanks! Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained

[R] how can I evaluate a formula passed as a string?

2010-06-24 Thread Mike Williamson
string) to become length(unique(x)) (a function to be evaluated as shown above). Thanks! Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained with abstract phase-space maps, Some x-ray

Re: [R] how can I evaluate a formula passed as a string?

2010-06-24 Thread Mike Williamson
what's already here. -- xkcd -- Help protect Wikipedia. Donate now: http://wikimediafoundation.org/wiki/Support_Wikipedia/en On Thu, Jun 24, 2010 at 10:29 AM, Peter Langfelder peter.langfel...@gmail.com wrote: On Thu, Jun 24, 2010 at 10:16 AM, Mike Williamson this.is@gmail.com wrote

Re: [R] meta analysis with repeated measure-designs?

2010-06-18 Thread Mike Cheung
0.956458098 -52.21583218 49.65624930 ablat -0.0287644840 0.007212163 -3.98832970 0.002566210 -0.04483418 -0.01269478 year 0.0007720798 0.011550188 0.06684565 0.948022174 -0.02496334 0.02650750 -- - Mike W.L. Cheung

Re: [R] meta analysis with repeated measure-designs?

2010-06-16 Thread Mike Cheung
information. I have coded it here for reference. Hedges, L. V., Tipton, E., Johnson, M. C. (2010). Robust variance estimation in meta-regression with dependent effect size estimates. Research Synthesis Methods, 1(1), 39-65. doi:10.1002/jrsm.5 Regards, Mike

[R] equivalent of stata command in R

2010-06-09 Thread mike mick
Dear all, I need to use R for one estimation, and i have readily available stata command, but i need also the R version of the same command. the estimation in stata is as following: 1. Compute mean values of relevant variables . sum inno lnE lnM Variable | ObsMean

Re: [R] equivalent of stata command in R‏

2010-06-09 Thread mike mick
From: saint-fi...@hotmail.com To: saint-fi...@hotmail.com Subject: RE: Date: Wed, 9 Jun 2010 09:53:20 + OK! sorry thats my fault, here the translations of the stata commands 1st step is to get the mean values of the variables, well that doesnt need explanation i guess, 2nd

Re: [R] equivalent of stata command in R‏‏

2010-06-09 Thread mike mick
as well: http://www.R-project.org/posting-guide.html Cheers Joris On Wed, Jun 9, 2010 at 11:54 AM, mike mick saint-fi...@hotmail.com wrote: From: saint-fi...@hotmail.com To: saint-fi...@hotmail.com Subject: RE: Date: Wed, 9 Jun 2010 09:53:20 + OK

Re: [R] 4D Plot

2010-05-27 Thread Mike Prager
On Thu, 27 May 2010 10:42:54 +0200, Spitzner, Andrea andrea.spitz...@uba.de wrote: Hello, I need some help with a 4D-Plot. I can't offer a lot of help, other than to note that There is code for a 4D plot at the R graphics gallery (I am the author) and perhaps looking at that might help.

[R] Problem with Sweave not recognising \Sexpr{}

2010-05-25 Thread Mike White
? I am using R 2.10.1 on Windows XP. Consider the \texttt{cats} regression example from Venables \ Ripley (1997). The data frame contains measurements of heart and body weight of \Sexpr{nrow(cats)} cats (\Sexpr{sum(cats$Sex==F)} female, \Sexpr{sum(cats$Sex==M)} male). Thanks Mike White

Re: [R] Problem with Sweave not recognising \Sexpr{}

2010-05-25 Thread Mike White
that it is necessary to set the syntax option in the Sweave function as follows Sweave(..., syntax=SweaveSyntaxNoweb) although I am not sure why this is required. Mike On 19:59, Mike White wrote: I am trying to run the Sweave example at http://www.stat.uni-muenchen.de/~leisch/Sweave/Sweave

Re: [R] Fwd: R apply() help -urgent

2010-05-11 Thread Mike White
Set up a function for the fisher.test on a 2x2 table and then include this in the apply function for columns as in the example below. The result is a list with names A to Z # set up a dummy data set with 100 rows Cat-LETTERS[sample(1:6,100, replace=T)] GL-sample(1:6, 100, replace=T)

Re: [R] Tinn-R RGui Send problem

2010-05-07 Thread Mike White
A possible work around would be to append the selection.r file to the .Rhistory file and then reload the history, e.g. file.append(.Rhistory, .trPaths[5]) loadhistory(file= .Rhistory) You can then access the code on the console, skipping the last 2 lines. [[alternative HTML

[R] Tinn-R RGui Send problem

2010-05-06 Thread Mike White
A possible work around would be to append the selection.r file to the .RHistory file and then reload the history, e.g. file.append(.Rhistory, .trPaths[5]) loadhistory(file= .Rhistory) You can then access the code on the console, skipping the last 2 lines. [[alternative HTML

[R] How to generate Mackey-Glass time series with ddesolve package?

2010-05-03 Thread Mike Beddo
this? - Mike Beddo [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented

Re: [R] Comparing the correlations coefficient of two (very) dependent samples

2010-05-03 Thread Mike Cheung
. http://www.statpower.net/Steiger%20Biblio/Steiger03.PDF Regards, Mike -- - Mike W.L. Cheung Phone: (65) 6516-3702 Department of Psychology Fax: (65) 6773-1843 National University of Singapore http

[R] Problem with Tinn-R communicating with REvolution R

2010-04-27 Thread Mike White
I have been using Tinn-R with R without any problems but when I try to use it with REvolution R I get the following error message when Tinn-R runs the configuration script and gets to the trDDEInstall() function: ## Start DDE trDDEInstall() trDDEInstall() Error in structure(.External(dotTcl,

Re: [R] How do you change library location ? (in R under windows XP)

2010-04-26 Thread Mike Prager
On Fri, 23 Apr 2010 15:22:45 +0300, Tal Galili tal.gal...@gmail.com wrote: Due to the new R 2.11 release, I want to implement Dirk's suggestion herehttp://stackoverflow.com/questions/1401904/painless-way-to-install-a-new-version-of-r . So for that I am asking - How can I (permanently) change R's

Re: [R] R and S-Plus: Two programs separated by a common language?

2010-04-26 Thread Mike Prager
On Thu, 22 Apr 2010 12:00:13 -0700 (PDT), Paul Miller pjmiller...@yahoo.com wrote: I was just wondering if anyone could give me some advice about the wisdom or folly of trying to use both [R and S-Plus]. I suspect that trying to use both will give you heartburn. When I switched from S-Plus to

Re: [R] Upgrading R using the global library folder strategy - what do you think about it?

2010-04-26 Thread Mike Prager
I think it makes more sense for most users to have a global library (as you call it), rather than put the library under the current installation. I have been doing that for years, and it saves a lot of trouble. When I have helped people learn R, the need to copy the library when updating is a

Re: [R] Page width figures in Latex

2010-03-28 Thread Mike Prager
of the environment specification. That assumes you have loaded the graphicx package. For example, \begin{figure}[!th] \begin{center} \includegraphics[width=\textwidth]{myfig.eps}\\ \end{center} \end{figure}% HTH, Mike __ R-help@r-project.org mailing

Re: [R] Read SAS data

2010-03-25 Thread Mike Reese
anything about that? Mike -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Nordlund, Dan (DSHS/RDA) Sent: Thursday, March 25, 2010 2:32 PM To: Nicola Sturaro Sommacal; r-help@r-project.org Subject: Re: [R] Read SAS data -Original

Re: [R] R on Linux - a primer

2010-03-18 Thread Mike Miller
they need to pull it off. Mike On Tue, 16 Mar 2010, Emmanuel Charpentier wrote: Le dimanche 14 mars 2010 à 18:04 -0400, Axel Urbiz a écrit : Hi, I'm looking to move from Windows into a 64-bit Linux environment. Which is the best Linux Flavor to use within R? To install R on this environment, do

Re: [R] R on Linux - a primer

2010-03-15 Thread Mike Miller
: https://help.ubuntu.com/community/SynapticHowto It couldn't be easier. I don't work for Ubuntu and I don't have any friends or relatives working there either. Mike __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] nano syntax highlighting for R

2010-03-13 Thread Mike Miller
on it much now, but maybe someone else will want to pick it up. Best, Mike -- Michael B. Miller, Ph.D. Bioinformatics Specialist Minnesota Center for Twin and Family Research Department of Psychology University of Minnesota # Syntax highlighting for R

Re: [R] A slight trap in read.table/read.csv.

2010-03-08 Thread Mike Prager
-prone, and possibly more. The only immediate solution to this accretion of overly clever behavior would be for someone to write new functions (say, Read.csv) that didn't do all those conversions behind the scenes. I'm not about to do that. Are you? Best of luck! -- Mike Prager, NOAA, Beaufort, NC

Re: [R] Assign Name of Data Frame

2010-02-12 Thread Mike Harwood
Marc, Thank you for your help. I had tried assign, but I did not enclose the table name in quotes in my function call. I needed to see what someone else had written before I ever would have noticed it! On Fri, Feb 12, 2010 at 10:00 AM, Marc Schwartz marc_schwa...@me.comwrote: On Feb 12,

Re: [R] Help Please!

2010-02-10 Thread Mike Williams
to go to sleep. Mike __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] metafor package: effect sizes are not fully independent

2010-02-07 Thread Mike Cheung
., Becker, B. J., Kalaian, H. (1988). Modeling multivariate effect sizes. Psychological Bulletin, 103, 111-120. van Houwelingen, H.C., Arends, L.R., Stijnen, T. (2002). Advanced methods in meta-analysis: multivariate approach and meta-regression. Statistics in Medicine, 21, 589-624. Regards, Mike

Re: [R] metafor package: effect sizes are not fully independent

2010-02-07 Thread Mike Cheung
. Orlando, FL: Academic Press. Regards, Mike -- - Mike W.L. Cheung Phone: (65) 6516-3702 Department of Psychology Fax: (65) 6773-1843 National University of Singapore http://courses.nus.edu.sg/course/psycwlm

[R] control of scat1d tick color in plot.Predict?

2010-01-27 Thread Mike Babyak
are produced by scat1d, but after spending a fair bit of time going through documentation, it still isn't clear to me how to do this in the context of lattice. Guidance would be greatly appreciated. Thanks, Mike Babyak Duke University Medical Center My code using R 2.10.1/windows XP myx-c(1,2,3,4) myy-c

[R] Error compiling R 2.10.1 on AIX

2010-01-19 Thread Mike Waldron
--prefix=/afs/.isis/pkg/r-2.10.1 --with-tcltk=/usr/local/lib --with-tcl-config=/usr/local/lib/tclConfig.sh --with-tk-config=/usr/local/lib/tkConfig.sh Mike Waldron __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] how can I use R functions in Fortran 90

2009-12-29 Thread Mike Prager
. -- Mike Prager, NOAA, Beaufort, NC * Opinions expressed are personal and not represented otherwise. * Any use of tradenames does not constitute a NOAA endorsement. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

[R] multiple plots using summary in rms package

2009-12-07 Thread Mike Babyak
I am missing. I'd be happy to provide some data if that would help. Any guidance would be greatly appreciated. Thanks, Mike Babyak Duke University Medical Center #summary of dietary variables broken out by Groups A, B, and C sumfc

Re: [R] Getting Sphericity Tests for Within Subject Repeated Measure Anova (using car package)

2009-11-10 Thread Mike Lawrence
-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Sergios (Sergey) Charntikov Sent: November-09-09 7:13 PM To: Mike Lawrence Cc: r-help@r-project.org Subject: Re: [R] Getting Sphericity Tests for Within Subject Repeated Measure Anova (using car package) Hi Mike, I tried to run my

Re: [R] Getting Sphericity Tests for Within Subject Repeated Measure Anova (using car package)

2009-11-10 Thread Mike Lawrence
' ) b$subject=paste(b$subject,b$treatment) #create unique sids ezANOVA( data=b , dv=.(value) , sid=.(subject) , within=.(day) , between=.(treatment) ) On Tue, Nov 10, 2009 at 6:47 AM, Mike Lawrence mike.lawre...@dal.ca wrote: Check out the reshape package for transforming data from long to wide

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