. If not, the underlying
distribution is another one. Something we cannot know, but you should
know what is going on with your data!
Uwe Ligges
thank you
Date: Tue, 21 Feb 2012 18:44:34 +0100
From: lig...@statistik.tu-dortmund.de
To: vanucia-schumac...@hotmail.com
CC: r-help@r-project.org
with CPLEX 11.1 on 32-bit
Windows XP.
--
I can find the file and see the codes. But what new path should I put, and what
to do next?
The path to your CPLEX installation?
Uwe Ligges
Thanks,
Wei
, hence it may be not that straightforward to get it done
and you wil have to read the INSTALL file from the source package carefully.
Uwe Ligges
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PLEASE do read the posting
.
Uwe Ligges
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and provide commented, minimal, self-contained, reproducible code
by which i can draw octants inside cube as well.
No, but you can easily add lines() or segments() to display that, see
the Examples section of the help page on how to add additional elements
to an existing plot.
Uwe Ligges
Thanks
[[alternative HTML version deleted
(seq(0, 10, by=2), rep(y0, 6), rep(10, 6))
segments(xyz1$x, xyz1$y, xyz2$x, xyz2$y, lty=dotted)
Best,
Uwe Ligges
Thanks
Kalyan http://r.789695.n4.nabble.com/file/n4399234/Latest.pdf Latest.pdf
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?
printcp() gives the minimal cp for which the pruning happens.
plotcp() plots against the geometric mean (see the help pages!)
Uwe ligges
Silje
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Please ask your Netezza support. I now they are proud on their R support
and will certainly help.
Uwe Ligges
On 16.02.2012 00:36, rusernetezza wrote:
We've recently installed a Netezza server and I am trying to integrate the R
GUI with this server and run functions using the server itself
requests
through Internet Explorer libraries. See ?setInternet2.
For the local network, that should not be required and
readLines(//hs-907/D$/protein%20Maintenance%20Logs/123.txt)
should show the file, hence I guess the OP forgot to omit the file: part.
Uwe Ligges
Duncan Murdoch
to be vectorized in x.
Uwe Ligges
Thanks a lot
Dimitris
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Please report bugs in packages to the corresponding package maintainer
(perhaps suggesting a fix if you have an idea how to do that).
Uwe Ligges
On 14.02.2012 12:42, Martin Batholdy wrote:
Hi,
according to ?rvm the relevance vector machine function as implemented in the
kernlab-package
has
GHard to tell given the file is not available nor do we see the first
lines of it.
Uwe Ligges
On 13.02.2012 10:51, Soheila Khodakarim wrote:
Dear All
I want to chose just spacial columns in R. (read table)
data1- read.table(/home/Documents/data.txt,header=F,sep = \t, as.is =F)
data.2-data1
Have you run update.packages() already?
Uwe Ligges
On 11.02.2012 23:02, liweichen0817 wrote:
I have problem installing rugarch, too.
I use R 2.14.1 on Mac OS X 10.7.3. When I tried to load rugauch, I got the
bellowing error message:
Loading required package: Rcpp
Loading required package
, read ?RNG
Uwe Ligges
Thanks.
Libo Sun
Graduate Student,
Department of Statistics,
Colorado State University
Fort Collins, CO
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Please do not double post.
Uwe Ligges
On 11.02.2012 23:20, slbfelix wrote:
Hi All,
I have a question about R parallel computing by using snowfall.
How can I set the seeds on parallel workers to get the same result as
sequential mode?
For example:
sfSapply(c(1,1),rnorm)
[1] 1.823082
is exactly on the date.
Uwe Ligges
plot.png
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and provide commented, minimal, self-contained
We don't have the data, but my guess is that you want to have some
factors in your data that were integers when you tried the code below.
Uwe Ligges
On 10.02.2012 03:43, Sam Steingold wrote:
I did this:
nb- naiveBayes(users, platform)
pl- predict(nb,users)
nrow(users) == 314781
ncol(users
an another splitting criterion to substitute
the
default criteria( gini or information)?
No.
Uwe Ligges
Does someone can help me ?
Thank you,
Myriam Tabasso
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package.skeleton with force = FALSE in order not to
overwrite existing files. Anyway, I typically edit the files of the
package directly, without using any helper functions.
And if you add a new function, you can use prompt() to prepare a
corresponding Rd file.
Uwe Ligges
Thanks,
Peter
to: label ~ . - 1. But note the
interpretation changes and it is *not* redundant in general.
Uwe Ligges
None of these is a big deal at all, but I'm just curious if I'm
missing something simple in how I'm doing things. Thanks.
__
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unstated in your
message).
Uwe Ligges
I've put together a little example that illustrates the memory
ballooning mentioned above which you can find here:
http://stackoverflow.com/questions/9220849/significant-memory-issue-in-r-when-iteratively-loading-rdata-files-killing-the
Is this a bug? Any
On 10.02.2012 04:53, R. Michael Weylandt wrote:
Consider the following in R 2.14.1 (seems to still be the case in Rdevel):
x- matrix(1:9, 3)
colnames(x) # NULL as expected
colnames(x, do.NULL = TRUE) # NULL -- since we didn't change the default
colnames(x, do.NULL = FALSE) # col1 col2 col3
for the outdated R version was removed in the meantime - I
guess the OP has not changed the default, hence R also looked into CRAN
but did not find the package anywhere.
Best,
Uwe Ligges
Warning in download.packages(pkgs, destdir = tmpd, available =
available,
:
no package 'ICSNP
with
the existing 'details'. Martin
Yes, and let me add: you may want to use \dQuote{} and friends rather
than real quotes, use markup for the e-mail address etc.
Uwe Ligges
\name{curatedData-package}
\alias{curatedData-package}
\alias{curatedData}
\docType{package}
\title{Cancer Gene
function and used it ?
x=c(10,29)
funtion3[1](x)
Yes, if you correct the typo and use list indexing with double brackets:
function3[[1]](x)
Uwe Ligges
Thanks
-
Thanks in Advance
Arun
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still
got it right.
Calculate the size of you model matrix. If the 29 columns are numeric,
this should be a peace of cake, hence you probably model interactions or
you are dealing with factors with several levels, so that you model
matrix is huge. We cannot know that.
Uwe Ligges
I have
. That is not always
required, hence R2WinBUGS just tries. If it fails, it continues and you
may get perfect results.
If things won't work, ask your Sysadmin for write permissions on that files.
Uwe Ligges
I am running R2WinBUGS from a windows 7 machine.
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On 06.02.2012 18:42, Timothy Bates wrote:
hi,
Does factanal() force the user to use the formula interface if they wish to
specify an na.action?
Yes, as the help page says:
na.action: The ‘na.action’ to be used if ‘x’ is used as a formula.
Uwe Ligges
v1- c(1,1,1,1,1,1,1,1,NA
the first column and write a two column data.frame afterwards.
Uwe Ligges
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and provide commented
my package is:
* checking Rd files ... WARNING
Error in Rd[[which]] : subscript out of bounds
Which R version (assuming R-2.14.1 or R-devel)? Can you make the file
available?
Uwe Ligges
problem found in ‘curatedData-package.Rd’
Thanks in advance!
Ben
[[alternative HTML version
that would
take an array of x values.
You can construct a formula programmatically (as.formula on a string
generated by paste, for example), but I doubt you will manage to
estimate a nonlinear model with 500 variables easily (!)
Uwe Ligges
Cheers Frank
really want to plot all and R thinks it dos not fit although you
believe it does, you can plot in two sets (first even, then odd numbers,
for example).
Uwe Ligges
- Fincher
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.
Uwe Ligges
On 08.02.2012 20:29, Ron Michael wrote:
Okay, so I understood that appending can only happen row-wise. Therefore I
tried with following code:
write.csv(matrix(1:5, 1), dat.csv)
write.csv(matrix(1:5, 1), dat.csv, append = TRUE)
Warning message:
In write.csv(matrix(1:5, 1), dat.csv
as
file1 = hdfs.file(testdata/synthetic_control.data)
R file1 = hdfs.file(testdata/synthetic_control.data)
Error: could not find function hdfs.file
???
Uwe Ligges
isf = hdfs.read(lsf,5242880,0)
l = kmeans(isf,2,10)
its not working.. please help
2. How to access the file in hdfs and give
On 07.02.2012 16:03, Mark Na wrote:
Dear R-helpers,
Please see the attached plot.
The problem is that I have too much space between the x-axis label
(which is mtext in an outer margin) and the plots.
My par settings for this plot are:
. I am just slightly uncertain about the $()
notation; in some docs I saw @BLAS_LIBS@ to appear. So is
$() ok? Is it the right syntax?
The @BLAS_LIBS@ should typically appear in an .in file only rather than
the Makevars file itself.
Uwe Ligges
Thanks again!
-Matyas
You do not have the path to the R binary set in your operating systems
(obviously Windows, although unstated) PATH environment variable. This
is explained in so many places, including the R Installation and
Administration manual ...
Uwe Ligges
On 03.02.2012 18:25, ql16717 wrote:
Hi,
I
(0.5,0.5),z)
zz
library(MASS)
out- nlm(z,zz,x=x hessian = TRUE)
Syntactically wrong: A comma is missing.
Meaningless: zz is an object returned by optim. You cannot use such an
object as starting value for the opimization of your z function.
Uwe Ligges
fish- out$hessian
fish
solve(fish
, start with
R-2.8.1-settings.bat which contains code that sets the environment
variables such as PATH appropriately.
Uwe Ligges
thanks,
Thomas
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PLEASE do read
why but without
that force option R cannot delete the subfolders/files.
What can I do?
Update to a recent version of R.
Uwe Ligges
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suppressMessages() already.
Uwe Ligges
I am just wondering is there any way that we can also suppress this one?
Because I need to loop this for many times, it's annoying to display this
one.
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Works for me.
Uwe Ligges
On 02.02.2012 02:09, Nick Matzke wrote:
Hi,
Until recently I was using the knncat classifier function of knncat on
an old computer (2.12, Mac OS X 10.4), and everything worked great.
However, now that I have updated to R 2.14.1 (on Mac OS X 10.7), knncat
seems broken
.
Since you are on Windows: See also ?bmp for a cleaner more direct
approach to print into the device right away.
You may also want to consider to produce vector graphic formats rather
than bitmaps - the former is in most but not all cases preferable.
Uwe Ligges
Thanks.
[[alternative
a Makevars file.
2. R CMD SHLIB QUIC.cpp shoudl do the trick already, perhaps some linker
flags are required for blas that can be specified in the same line, see
R CMD SHLIB --help
Uwe Ligges
This actually built and created a loadable package but I would want to
do it more the R-way
' to use this.
If you like the apply way, you have a vector v and your matrix M:
sum(apply(table.combos, 1, function(x) all(x == mine)))
Uwe Ligges
Thanks in advance for the help!
Cheers,
Melissa
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WinBUGS lives.
You may want to switch to a more recent version for controlling BUGS
sampling, e.g. the BRugs package that does it more integrated into R
or R2OpenBUGS as the OpenBUGS interface.
Uwe Ligges
but R looks for
winBugs at C:/Program Files/WinBUGS14/.
I already had changed the working
in the manual R
Installation and Administration).
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal
(except for using a different path since the once you
are using does not work for me, since OpenBUGS cannot deal with spaces
in the paths which is the case under German versions of Windows).
Hence my suggestion to ask on some BUGS mailing list if anybody can
reproduce your problems.
Uwe Ligges
On 27.01.2012 11:04, Alex Hofmann wrote:
Hi,
I have a huge collection of 6-channel .wav files containing audio and
sensor recordings, which I need to analyse, across all 6 channels.
I'm thinking about what will be easier to do.
1. Just split the channels in an external audio-editor and than
Is there a reason you answer a 3.5 years old message?
Uwe Ligges
On 27.01.2012 12:37, kingsly wrote:
According to the source code of embed function, it will stop work if
dimention is1 orn . Part of the embed source code is mention below for
your reference.
if ((dimension 1) | (dimension n
1. Use a sensible subject line
2. Figure margins too large means there is no space in the device to
plot the data, the margins take (almost) all the space already.
Uwe Ligges
On 26.01.2012 17:59, R. Michael Weylandt wrote:
I usually get that error when I'm replotting on a window/device
On 25.01.2012 22:20, Tal Galili wrote:
Hello dear list,
I just noticed that:
Package ‘doSMP’ was removed from the CRAN repository.
http://cran.r-project.org/web/packages/doSMP/index.html
Does any one know the reason for this?
Is this a technical or a legal (e.g: license) issue?
If legal
On 26.01.2012 09:39, Barry Rowlingson wrote:
On Thu, Jan 26, 2012 at 8:02 AM, Uwe Ligges
lig...@statistik.tu-dortmund.de wrote:
On 25.01.2012 22:20, Tal Galili wrote:
Does any one know the reason for this?
Is this a technical or a legal (e.g: license) issue?
If legal issues were
(since you made them)
That does not mean you are safe: you can also make a virus from its
sources ...
Uwe Ligges
Not a perfect workaround, but AV tends not to like OSS stuff for
whatever reason...
Michael
On Tue, Jan 24, 2012 at 2:46 PM, Stephen P Molnar
s.mol...@sbcglobal.net wrote:
I keep
On 24.01.2012 20:46, Stephen P Molnar wrote:
I keep finding the Win32\Huer virus in colorspace_1.1-1.zip for R x64 2.14.1
running MS Windows 7. As a result I am not able to use rattle or
ChemometricsWithR. I have tried several different mirrors with the same
result. Fortunately AVG has
/ folder in an .R file without
exporting it form the NAMESPACE.
Uwe Ligges
Thanks
Christophe
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On 25.01.2012 02:16, R. Michael Weylandt wrote:
I think you are getting stuck on the same regexp problem as before
(i.e., once again the dollar sign is being interpreted as the
beginning
You meant end.
Uwe
of the line rather than an actual dollar sign)
If I understand your question,
available before Friday.
Uwe Ligges
On 25.01.2012 09:55, Jin Minming wrote:
I forgot to add the R codes. The following are the codes I used for this
problem:
###Step by step example:###
library(BRugs) # loading BRugs
## Now setting the working directory to the examples' one:
setwd(options
Yes, use grepl() rather than grep().
uwe Ligges
On 25.01.2012 12:28, Ana wrote:
Is there a way to get a TRUE/FALSE condition as result, when using grep ?
c=The file will be updated
if grep(updated,c)==1 then I get TRUE
but
How can I deal with grep(new,c) ? it gives integer(0)
Thanks
for me.
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
,
/johannes
Try an R version that is recent - it works for me.
Uwe Ligges
I first tried it with R 2.13.2 and raster version 1.9-64 (16-January-2012).
Now I also installed the most recent version R 2.14.1 (Platform:
i386-pc-mingw32/i386 (32-bit)) and raster version 1.9-64 (16-January-2012
)
x11()
plot(DEU_alt,axes=TRUE)
best regards,
/johannes
Try an R version that is recent - it works for me.
Uwe Ligges
I first tried it with R 2.13.2 and raster version 1.9-64
(16-January-2012).
Now I also installed the most recent version R 2.14.1 (Platform:
i386-pc-mingw32/i386 (32-bit
before Friday.
Uwe Ligges
On 25.01.2012 09:55, Jin Minming wrote:
I forgot to add the R codes. The following are the
codes I used for this problem:
###Step by step example:
###
library(BRugs) # loading BRugs
## Now setting the working directory to the examples'
one:
setwd(options
Uwe Ligges
Couldn't resist, could you ?
Not at all.
googling FEAR DEA R gives this:
http://www.clemson.edu/economics/faculty/wilson/Software/FEAR/fear.html
I found that FEAR, but how could I be sure this was the one cited by the
OP? Anyway, I explained the nonsense of nonexisting
-installed
That mean you have not installed a binary package that has been built
for R-2.14.x for Windows, but something else, probably for a much older
version. You need more recent version (e.g. by trying to install it from
sources yourself).
Uwe Ligges
I have attempted to re-install
’ is not installed for 'arch=i386'
Sounds like this package was not built for R for Windows or for an
ancient version of it. Since I FEAR we do not have access to your FEAR,
we can only guess
Uwe Ligges
I've tried more times, with different versions of R (2.11 and 2.12) but the
error
to your code? To your version of R? If so,
into which library? Have you had that package before or is it new?
then I have to recompile my entire installation,
Again, which installation? R? A package? If packages: What is the
hierarchy of dependencies?
Uwe Ligges
correct? Seems like
the publication of their new methods (like
Journal of Statistical Software). Any ideas if it is possible ?
Yes.
Best,
Uwe Ligges
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,labels=c,xpd=TRUE)
Change to
text(colMeans(bar), par(usr)[3]-.0025,srt=45,adj=1,labels=c,xpd=TRUE)
Uwe Ligges
I cannot figure out how to get the rotated labels to match up with grouped
bars rather than individual bars - ie one label per group
Cheers,
Jim
() inn some object:
lg - legend(..)
str(lg)
you will see that there is information about the soze and location of
the legend that can be used to calculate positions for other text()
around
Uwe Ligges
Thank you.
Kevin
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Uwe Ligges
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.
= snap
Any hints?
No, given you do not manage to tell us how your setup looks like now.
Do you think i should rename the convert function
Which convert function? You do not call such a function in the example
you gave above, do you?
Uwe Ligges
to float2si or something like
On 20.01.2012 09:01, Ashy wrote:
Could anyone please tell how to pass parameters of form to server in rsp?
Could you please ask questions that are semantically understandable and
additionally read the posting guide?
Thanks,
Uwe Ligges
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Not sure if I understand the question: If you have more data the grid
produced by image() or contour() will be finer anyway...
Perhaps we just need an example what you are actually asking for.
Uwe Ligges
On 20.01.2012 13:28, Roary wrote:
Hi All,
I have 3 variables which present a perfect
properly.
Uwe Ligges
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is on some other possibly network mounted file system?
Uwe Ligges
Thanks, Jos
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide
On 19.01.2012 15:02, Tsidkenu wrote:
Thanks for the reply but I want to color (of gray) the triangle, square,
circle and the other symbol appear in the legend.
PLEASE do read the posting guide.
Uwe Ligges
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. The length of the resulting vector will be length(unique(groups)).
I think this draws a clearer picture to you. Sorry for not precisely pointing
it out in my first post.
Thanks and Regards!
sapply(split(numbers, groups), function(x) cor(x[,1], x[,2]))
Uwe Ligges
-Ursprüngliche Nachricht
On 16.01.2012 18:00, chaps31 wrote:
Hi
The log file (not as .odc and as .txt file) is in R'd tempdir() after
WinBUGS returns to R.
Was this my statement?
I actually meant to write *both* rather than not above.
Best,
Uwe
Is there any way to save the .odc file?
Ruth
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Uwe Ligges
Thank you,
Irek
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it?
Uwe Ligges
Best
Riccardo
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PLEASE do read the posting guide
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and provide commented, minimal, self-contained, reproducible
code, we cannot show how to change that.
Uwe Ligges
Can anyone provide me with a solution?
Regards,
RNoob
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I think the amount of people on this list who understand your question
is roughly zero. We cannot see how the subject is related to the body of
your function nor do we see any incidence that ou followed the posting
guide.
Uwe Ligges
On 17.01.2012 17:06, Poul Kristensen wrote:
Hi !
I am
start to execute the next part in WinBUGS:
file.copy(file.path(tempdir(), log.txt),
c:/some/directory/to/log-model1.txt)
Best,
Uwe Ligges
Many thanks
Ruth Chapman
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On 12.01.2012 17:38, Frank Harrell wrote:
As a slight aside, Tibco/Spotfire originally planned to provide a capability
to load R packages into S-Plus. This always seemed to me to be a hard thing
to do, and if my understanding is correct, this proved to be too difficult
to do in S-Plus, at
On 14.01.2012 20:41, Duncan Murdoch wrote:
On 12-01-13 11:48 AM, Sarah Goslee wrote:
...
I hope that it was a momentary glitch; greater disagreement between
Nabble
and the email list will cause all sorts of fun. If the interface,
whatever it is,
starts stripping out code? I'll have to quit
Katja,
since the information given in this message is not sufficient to be able
to help (question whether you are forking or parallelization happens
through, e.g., MPI or sockets) and no reproducible code is given yet (as
the posting guide ask you to provide), let us discuss this off-list and
as the OS allows, hence you may want to run it in a virtual
machine in such a case.
Uwe Ligges
Well, of course you could build your own
version of R that did not ship those functions. Anyway, typical restrictions
are handled by settig permissions on the file system and/or arrange quotas
for space
1. Please reply to your former messages (to keep it in the same thread)
and quote them.
2. You may want to ask the maintainers of the two projects. I doubt you
will find too many users who are using both of them at the same time.
Uwe Ligges
On 12.01.2012 05:39, Sachinthaka Abeywardana wrote
anyway, 2.14.1 is the
recent release version)
b) Try on a bigger machine or upgrade the available memory in your
machine. Try on a 16Gb machine, for example. This is easily possible
with simple modern home computers nowadays, 4*4 Gb is roughly 100 EUR
nowadays.
Uwe Ligges
On 12.01.2012 12
On 12.01.2012 13:21, gli wrote:
thanks for the help, Duncan. but when you said study some geometry,
He meant basic school maths, I suppose.
Uwe
do you
mean the rgl package pdf reference mannual or other documents? please
clarify. i am a total beginner on rgl.
graham
--
View this
You have to load the gtools package via library() or require() before
you can make use of the function.
Uwe Ligges
On 12.01.2012 12:18, ikuzar wrote:
Hi everybody,
I want to use macro in my R code. But defmacro was not in my libraries. So I
installed it :
install.packages(gtools
manually and then installing it through the Terminal. Yet
the fundamental problem remains. I downloaded R 2.14.1 several times from
different mirrors
I think you should change the mirror for the installation of packages,
not for downloading R.
Uwe Ligges
and there are many packages that do
to limit session operating memory and CPU time?
Ask he manual of your operating system.
Best,
Uwe Ligges
What additional
security considerations must be taken care of?
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of the project can be more easily seen and used.
.RData is a binary file. Are there tools that let me work with this file?
What if I rename it and start a new .RData file when I next invoke R? Could
I then specify which .RData file should be available on demand?
See ?save and ?load
Uwe Ligges
I
plate bus stop?
http://www.geocities.co.jp/yuganatabi/bus-stop-aba.html
4) and finally, set the orientation angle of the circle plate?
What about readin the help pages for the functions Duncan cited?
Uwe Ligges
grateful if u give me some directions or at least let me know if it is
possible
the package works fine with R-2.14.1 (aka R-release).
Uwe Ligges
Thank you for your help.
Natalia Norden
Natalia Norden
Profesor Asistente
Departamento de Ecología y Territorio
Facultad de Estudios Ambientales y Rurales
Pontificia Universidad Javeriana
Bogotá, Colombia
Tel: 320 83 20 Ext: 2448
See ?par and its argument mgp,
e.g.:
par(mgp=c(3, 0.5, 0))
Uwe Ligges
On 08.01.2012 20:13, vibhava wrote:
hi,
i am using par(mrow=c(6,6)) function to get 6x6 plots on one screen. the
problem that i am having is that the axis tick labels are far away from the
ticks and going
or a url which
will help me do this?
That package has its own mailing list, just Google for rcom mailing list.
Uwe Ligges
Thanks.
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PLEASE do read the posting guide
of the
interface.
Best,
Uwe Ligges
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