> On 30 Oct 2015, at 18:46 , Daniel Wagenaar wrote:
>
> Dear R users:
>
> All textbook references that I consult say that in a nested ANOVA (e.g.,
> A/B), the F statistic for factor A should be calculated as
>
> F_A = MS_A / MS_(B within A).
>
That would depend on which hypothesis you test
Dear R users:
All textbook references that I consult say that in a nested ANOVA (e.g.,
A/B), the F statistic for factor A should be calculated as
F_A = MS_A / MS_(B within A).
But when I run this simple example:
set.seed(1)
A <- factor(rep(1:3, each=4))
B <- factor(rep(1:2, 3, each=2))
Y <-
Hi all,
I'm trying to perform a nested ANOVA, in which "Rewetted" is the main
factor and "Position" is a fixed factor nested in "Location". I'm
interested in the effect of "Rewetting" and "Position" on the dependent
variable (in this case called N), and also in the interaction between these
factor
Hi,
How do I do a Duncan Multiple Range Test, with Nested ANOVA.
I am not sure how to write the nested variable within dmrt.
Any suggestions?
Archana
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joerg stephan rhrk.uni-kl.de> writes:
>
> Hi,
>
> I tried to do a nested Anova with the attached Data. My response
> variable is "survivors" and I would like to know the effect of
> (insect-egg clutch) "size", "position" (of clutch on twig) and "clone"
> (/plant genotype) on the survival of
Hi,
I tried to do a nested Anova with the attached Data. My response
variable is "survivors" and I would like to know the effect of
(insect-egg clutch) "size", "position" (of clutch on twig) and "clone"
(/plant genotype) on the survival of eggs (due to predation). Each plant
was provided with
Hi:
On Thu, Oct 21, 2010 at 4:13 PM, mirick wrote:
>
> Hello all,
> Can any of you R gurus help me out? Im not all that great at stats to
> begin with, and Im also learning the R ropes (former SAS user).
>
Sounds like you need a support group :)
> Heres what I need help with
I have a ne
Hi Rick,
Whenever I hear my instant association with post hoc and ANOVA would
be ?TukeyHSD However, if you are not comfortable interpreting the
model you ran, this suggests that you may benefit more from learning
more statistical theory or finding someone to consult with who can
help. You might
Hello all,
Can any of you R gurus help me out? I’m not all that great at stats to
begin with, and I’m also learning the R ropes (former SAS user).
Here’s what I need help with… I have a nested sample design and ran a
nested anova, but I don’t know how to interpret the results
habitat (four dif
milton, Ontario, Canada
web: socserv.mcmaster.ca/jfox
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On
> Behalf Of Anita Narwani
> Sent: June-03-10 8:49 PM
> To: Joris Meys
> Cc: r-help@r-project.org
> Subject: Re: [R]
Yes I understood the strangeness of removing a main effect without
interactions that contain it because I did this during my efforts using
model simplification. I had checked out the link you sent a couple of days
ago. It was useful. So does Type II SS remove both the factor and any
interactions co
SPSS uses a different calculation. As far as I understood, they test main
effects without the covariate. Regarding the difference between my and your
results, did you use sum contrasts?
options(contrasts=c("contr.sum","contr.poly"))
On Fri, Jun 4, 2010 at 2:19 AM, Anita Narwani wrote:
> Hi Joris,
Hi Joris,
That seems to have worked and the contrasts look correct.
I have tried comparing the results to what SPSS produces for the same model.
The two programs produce very different results, although the model F
statistics, R squared and adjusted R squared values are identical. The
results are s
Hi Anita,
I have to correct myself too, I've been rambling a bit. Off course you don't
delete the variable out of the interaction term when you test the main
effect. What I said earlier didn't really make any sense.
That testing a main effect without removing the interaction term is has a
tricky
I see where my confusion comes from. I counted 4 levels of Phyto, but
you have 8, being 4 in every level of Diversity. There's your
aliasing.
> table(Diversity,Phyto)
Phyto
Diversity M1 M2 M3 M4 P1 P2 P3 P4
H 0 0 0 0 6 6 6 6
L 6 6 6 6 0 0 0 0
There's no ne
Could you copy the data?
Data <- data.frame(C.Mean,Mean.richness,Zoop,Diversity,Phyto)
dput(Data)
I have the feeling something's wrong there. I believe you have 48
observations (47df + 1 for the intercept), 2 levels of Diversity, 4 of Phyto
and 48/(3*4)=4 levels of Zoop. But you don't have 3df fo
I would just like to add that when I remove the co-variate of Mean.richness
from the model (i.e. eliminating the non-orthogonality), the aliasing
warning is replaced by the following error message:
"Error in t(Z) %*% ip : non-conformable arguments"
That is when I enter this model:
carbonmean<-lm(C
Thanks for your response Joris.
I was aware of the potential for aliasing, although I thought that this was
only a problem when you have missing cell means. It was interesting to read
the vehement argument regarding the Type III sums of squares, and although I
knew that there were different positi
Hello,
I have been trying to get an ANOVA table for a linear model containing a
single nested factor, two fixed factors and a covariate:
carbonmean<-lm(C.Mean~ Mean.richness + Diversity + Zoop + Diversity/Phyto
+ Zoop*Diversity/Phyto)
where, Mean.richness is a covariate, Zoop is a categorical va
that's diversity/phyto, zoop or phyto twice in the formula.
On Thu, Jun 3, 2010 at 3:00 AM, Joris Meys wrote:
> That's what one would expect with type III sum of squares. You have Phyto
> twice in your model, but only as a nested factor. To compare the full model
> with a model without diversity
That's what one would expect with type III sum of squares. You have Phyto
twice in your model, but only as a nested factor. To compare the full model
with a model without diversity of zoop, you have either the combination
diversity/phyto, zoop/phyto or phyto twice in the formula. That's aliasing.
Hello,
I have been trying to get an ANOVA table for a linear model containing a
single nested factor, two fixed factors and a covariate:
carbonmean<-lm(C.Mean~ Mean.richness + Diversity + Zoop + Diversity/Phyto +
Zoop*Diversity/Phyto)
where, *Mean.richness* is a covariate*, Zoop* is a categor
Hello,
I have the following data and would like to get some hints on how to analyze
tis data, nested analysis?
Habitats: 2 (Seagrass meadows and sandy bottoms)
Seasons: 4 (Winter, Spring, Summer and Autumn)
Locations: 4 (2 locations for for each habitat and season)
Replicates: 3 replicates for
Dear R-users,
Iâd like to make a nested anova on my data, and since Iâm discovering both
R and statistic, Iâd like to be sure that Iâm not doing something stupid.
Here is my data: Iâve measured some variable responses (Y, for example leaf
size) for different plants grown on three differ
-
cuncta stricte discussurus
-
-Ursprüngliche Nachricht-
Von: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] Im
Auftrag von Jeff DaCosta
Gesendet: Thursday, July 16, 2009 3:37 PM
An: r-help@r-project.org
Betreff: [R] Nested ANOVA
Biostatistics
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of Jeff DaCosta
Sent: Thursday, July 16, 2009 12:37 PM
To: r-help@r-project.org
Subject: [R] Nested ANOVA residuals error
I am having trouble setting up a nested anova model
I am having trouble setting up a nested anova model. Here is a
truncated version of my data:
> data
Ind Treatment PC1
1 PER14SC 1.14105282
2 PER14SH 1.45348615
3 PER14AC 2.45096904
4 PER25SC 1.23687887
5 PER25SH 4.54797450
6 PER2
On Mon, 8 Sep 2008, [EMAIL PROTECTED] wrote:
I have a nested ANOVA, with a fixed factor "tmt" nested within "site"
(random). There are missing values in the data set.
aeucs, tmt and site have been defined as objects
I have tried:
model1=lme(aeucs~tmt,random=~1|tmt/site)
I think you want lm
I have a nested ANOVA, with a fixed factor "tmt" nested within "site" (random).
There are missing values in the data set.
aeucs, tmt and site have been defined as objects
I have tried:
model1=lme(aeucs~tmt,random=~1|tmt/site)
I get the following error message
Error in na.fail.default(list(aeuc
Hi Stephen,
On Sat, Apr 26, 2008 at 10:29 AM, Stephen Cole <[EMAIL PROTECTED]> wrote:
..
>
> I have managed to accomplish my first two goals by analyzing the data
> as a 3 level nested Anova with the following code
>
> mod1 <- aov(Count~Region/Location/Site, data=data)
>
> This allows me t
Hello R List:
My problem is with a nested anova. I have read the r-help and it has
answered some of my questions but i still need some help on this one.
I have also posted for help on this data set before, so i apologize in
advance for any repetition.
My design is as follows:
response: Quadrat
venables/
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Daniel Bolnick
Sent: Wednesday, 6 February 2008 2:28 PM
To: r-help@r-project.org
Subject: [R] Nested ANOVA models in R
Hi,
I'm trying to work through a Nested ANOVA for the following sc
Hi,
I'm trying to work through a Nested ANOVA for the following scenario:
20 males were used to fertilize eggs of 4 females per male, so that
female is nested within male (80 females used total). Spine length
was measured on 11 offspring per family, resulting in 880
measurements on 80 families
Francesc Montan� ctfc.es> writes:
>
>
> Hello all,
>
> This may be a simple question to answer, but I'm a little bit stumped with
> respect to the calculation of the F statistics in nested anovas with
> unbalanced design in R.
I would strongly recommend getting a copy of Pinheiro
Hello all,
This may be a simple question to answer, but I'm a little bit stumped with
respect to the calculation of the F statistics in nested anovas with
unbalanced design in R.
In my case, I have 11 vegetation transects (with 1000 10cmx10cm squares),
where we estimated shrub cover. We have tw
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