Re: [R] SNPRelate package error

2013-01-23 Thread dunningl
I had the same problem but it now works if you remove some of the #info lines at the top of the file so that the number of lines is the same as the example sequence.vcf file before the data starts -- View this message in context:

[R] SNPRelate package error

2013-01-22 Thread sun-ye
Dear, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance. vcf.fn - system.file(extdata,str.vcf,package=SNPRelate) snpgdsVCF2GDS(vcf.fn,test.gds) Start snpgdsVCF2GDS ... Extracting

Re: [R] SNPRelate package error

2013-01-22 Thread Pascal Oettli
Hello, Why do you think it is a package error? The error message says that the file [...] has different numbers of columns. Please check that file first. Regards, Pascal Le 22/01/2013 16:05, sun...@scib.ac.cn a écrit : Dear, I am using the R package SNPRelate but I found an error when I

[R] SNPRelate package error

2012-09-12 Thread Joao Fadista
Dear all, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance. vcf.fn - system.file(extdata, sequence.vcf, package=SNPRelate) snpgdsVCF2GDS(vcf.fn, test.gds) Start snpgdsVCF2GDS ... Open

Re: [R] SNPRelate package error

2012-09-12 Thread John Kane
Are you sure that you have write permission to the directory that R is trying to write to? John Kane Kingston ON Canada -Original Message- From: joao.fadi...@med.lu.se Sent: Wed, 12 Sep 2012 12:37:42 + To: r-help@r-project.org Subject: [R] SNPRelate package error Dear all

Re: [R] SNPRelate package error

2012-09-12 Thread Joao Fadista
(0)40 391237 e-mail: joao.fadi...@med.lu.se -Original Message- From: John Kane [mailto:jrkrid...@inbox.com] Sent: den 12 september 2012 15:13 To: Joao Fadista; r-help@r-project.org Subject: RE: [R] SNPRelate package error Are you sure that you have write permission to the directory