I had the same problem but it now works if you remove some of the #info lines
at the top of the file so that the number of lines is the same as the
example sequence.vcf file before the data starts
--
View this message in context:
Dear,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in
advance.
vcf.fn - system.file(extdata,str.vcf,package=SNPRelate)
snpgdsVCF2GDS(vcf.fn,test.gds)
Start snpgdsVCF2GDS ...
Extracting
Hello,
Why do you think it is a package error?
The error message says that the file [...] has different numbers of
columns. Please check that file first.
Regards,
Pascal
Le 22/01/2013 16:05, sun...@scib.ac.cn a écrit :
Dear,
I am using the R package SNPRelate but I found an error when I
Dear all,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in advance.
vcf.fn - system.file(extdata, sequence.vcf, package=SNPRelate)
snpgdsVCF2GDS(vcf.fn, test.gds)
Start snpgdsVCF2GDS ...
Open
Are you sure that you have write permission to the directory that R is trying
to write to?
John Kane
Kingston ON Canada
-Original Message-
From: joao.fadi...@med.lu.se
Sent: Wed, 12 Sep 2012 12:37:42 +
To: r-help@r-project.org
Subject: [R] SNPRelate package error
Dear all
(0)40 391237
e-mail: joao.fadi...@med.lu.se
-Original Message-
From: John Kane [mailto:jrkrid...@inbox.com]
Sent: den 12 september 2012 15:13
To: Joao Fadista; r-help@r-project.org
Subject: RE: [R] SNPRelate package error
Are you sure that you have write permission to the directory
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