Re: [R] upgrade from 3.1.1 3.1.2

Mindreading option not enabled. Please make your example reproducible by including all code necessary for us to reproduce your problem starting from an empty R environment. --- Jeff Newmiller

Re: [R] segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages

Perhaps you are not using a compatible compiler. I believe this is off-topic for this mailing list, though.. see the Posting Guide. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] factor levels numeric values

anyway (using strong functions) then you can use the stringsAsFactors=FALSE or as.is=TRUE parameter settings and avoid the as.character() band-aid in your code. --- Jeff Newmiller

Re: [R] R CMD Rd2txt generate _^H for in all section titles

Which text editor can actually display _^H correct? Not aware of any. It is from very old line printer behavior, which most (all?) printers can still support even though few computers are set up to utilize it. --- Jeff

Re: [R] file.copy

Your list.of.files variable just has filenames without the fromFolder path. Try file.copy(file.path,fromFolder,list.of.files), toFolder) --- Jeff NewmillerThe . . Go Live

Re: [R] file.copy

Sorry.. typo... file.copy(file.path(fromFolder,list.of.files), toFolder) --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] How to put inlined C code on a worker node?

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] Lexical scoping/calling stack issue: R fails to recognize an argument's default value

/How-R-Searches-And-Finds-Stuff/ [2] http://adv-r.had.co.nz/Environments.html --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Data Import to R

other parameters you can also give to read.csv.) Once those special values are specified, then you should get numeric columns just fine. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] Fine controlling three dots argument dispatch to functions with identical argument names

, ... ) } --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer

Re: [R] Help in code for fitting a growth model

--- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer

Re: [R] request

--- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries

Re: [R] Fine controlling three dots argument dispatch to functions with identical argument names

to associate unique names with unique behaviors. From this perspective, your reluctance to define a unified set of uniquely-named parameters for each of foobar and (and apparently foo) seems illogical. --- Jeff Newmiller

Re: [R] Removing rows in a data frame containing string in rownames

Not clear what you did. Is this an example of FAQ 7.16? --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Mapping code not working

://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Equivalent to matlab .* operator in R

are folded vectors in R... every matrix can be thought of as a linear vector of columnwise data with dimension attributes. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] Conditionally replace multiple rows in a dataframe

function of that name. Assuming the data frame is in variable DF... DF[ !DF$ToKeep, c(value1,value2) ] - NA should do it. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] DOT PLOT help!!

://www.statmethods.net/graphs/dot.html [2] R is interactive.. learn to use the str function and the help system (try typing ?str at the R prompt) to examine variables that examples are using. --- Jeff Newmiller

Re: [R] Reading FCS files with flowCore package

Wrong list. See http://www.bioconductor.org/help/support/ --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] More RGoogleDocs - R1C1 reference style

guide http://www.R-project.org/posting-guide.html which says, among other things, that you should be posting in plain text on this list. Also note: and provide commented, minimal, self-contained, reproducible code. --- Jeff

Re: [R] porting an access database to sqlite

Counting rows is not something RODBC is supposed to do. That is a very basic SQL query that you can use RODBC to execute: SELECT COUNT(*) FROM yourtablename --- Jeff Newmiller

Re: [R] Presentation tables in R (knitr)

of a button. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] ggplot facet and subsetting

I am not quite sure what you want to achieve here, but you only have one factor column so shouldn't you be using facet_wrap(~stroj), perhaps with nrow or ncol parameters? --- Jeff Newmiller

Re: [R] plot.hclust point to older version

.) --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar

Re: [R] porting an access database to sqlite

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer

Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

In what way would that be unlike the link that is already there? --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

of organizations using it so it may work better than my initial impression tells me it does. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] trouble installing R from source on Windows 8

Stop using administrator. If and only if Windows prompts you for permission to install, give it your password. Stay as far away from administrator as you can. --- Jeff Newmiller

Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

criticizing it. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] R dplyr solution vs. Base R solution for the slect column total

Seems like you have what you want, unless you meant to show something different than you did show. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] move date-values from one line to several lines

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O

Re: [R] Regarding new version of R library

I suggest that you contact the maintainer of that package, who should be identified by using the maintainer function (see ?maintainer) or on the website where you obtained it. --- Jeff Newmiller

Re: [R] combining unequal dataframes based on a common grouping factor

.. but the actual data can affect how well any solution works so giving us dput output is crucial. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] outputs of a function

be quite useful later. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO

Re: [R] Getting the most recent dates in a new column from dates in four columns using the dplyr package (mutate verb)

efficiently than testing which rows have na.date.cases==1. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Run script automatically on several input files in the directory and produce separate outputs?

, full.names=TRUE ) lapply( fnames, myplotfilecreator ) --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Rename multiple files in a directory and write renamed files back to directory

function, so perhaps you should read ?seq --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] How to build a vignette?

documentation. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] How to build a vignette?

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer

Re: [R] backslash quirk in paste

fname = John; lname = Smith ans - paste( fname, \\ , lname ) cat( ans) print( ans ) Note that ans only has one backslash in it, but print gives you a source-suitable string with the escape character. --- Jeff Newmiller

Re: [R] Condensing data.frame

the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] date time problem

http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] vectorization of rolling function

/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff Newmiller

Re: [R] date time problem

as NA. This may be due to DST, which I do not know how to handle in R. Best, Alemu  On Sun, Dec 7, 2014 at 1:59 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us wrote: You have not provided a reproducible example, so anything I say could be wrong just due to misinterpretation. Please

Re: [R] Merging two data.frames

https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff Newmiller

Re: [R] Finding unique elements faster

-faster-tp4700539.html Sent from the R help mailing list archive at Nabble.com. __ --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] Printing/Generating/Outputting a Table (Not Latex)

pdflatex appears to have run, because it exited. You should look at the tex log file, the problem is more likely that the latex you sent out to pdflatex was incomplete. --- Jeff Newmiller

Re: [R] Validation data critically small with GSIF

be able to look at the package source code and define your own similar functions for temporary use. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] x axis position and ggplot2

I don't think that is possible with the ggplot2 package. Try lattice or base graphics? --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] Working with data frames

Ggplot2 also depends on factors, so learn about them asap. It does have some support for automatically converting strings to factors in some cases, but it doesn't always work the way you want it to. --- Jeff Newmiller

Re: [R] Invisible Printing

Yes. The help file for this function explains why it is used. If you don't want to use it, that is fine. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] Getting a Error: unexpected symbol in:

data along with sample code... so we know all the pieces of the puzzle that might be giving you trouble. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] sort by decreasing columns?

... in particular post using plain text because HTML does not always survive the trip to us intact. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] abline function : plot.new has not been called yet

to keep this distinction in mind, you can probably find examples on the web, such as [1], or in help files such as ?panel.abline. [1] http://apcg.uoregon.edu/GeogR/topics/lattice.htm --- Jeff Newmiller

Re: [R] Extract values from multiple lists

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] Stop R from changing matrix to numeric

be needing to read about the drop parameter for indexing: ?[ which is also mentioned in the Introduction to R document that accompanies the software in the section on indexing. --- Jeff Newmiller

Re: [R] how to make this get command work?

]] --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] Make 2nd col of 2-col df into header row of same df then adjust col1 data display

, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff Newmiller

Re: [R] number of fuctions in a R-package

]] --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries

Re: [R] Add encoded special characters (greek characters) as text to plot

Read the posting guide. The solution is likely to depend on your operating system and graphics devices. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] Problems with spatial data for Masterthesis

-reproducible-example --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] Make 2nd col of 2-col df into header row of same df then adjust col1 data display

Please keep the list in the loop. Take a look at my code again... the factor function can accept a vector of all levels you want it to include. --- Jeff NewmillerThe . . Go Live

Re: [R] How to pass variable column name into R function

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff Newmiller

Re: [R] R - Aggregate 3-Hourly Block Data into Weekly (Melt)

, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] Hash, variable names restriction

do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] non negativity constraints if else function

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] how update to latest version of R on mac

for general questions about R (yes, read the Posting Guide). --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Add encoded special characters (greek characters) as text to plot

You are welcome, but you have not yet followed the Posting Guide instructions, so you may not have prompted someone familiar with your situation to respond yet. --- Jeff Newmiller

Re: [R] non negativity constraints if else function

you read the help file for the optim function? It includes some options for constrained optimization that might help you. (no more comments) 20 Ara 2014 tarihinde 20:41 saatinde, Jeff Newmiller jdnew...@dcn.davis.ca.us ?unlar? yazd?: if weight element is negative set it to zero, else

Re: [R] VaR and ES through MonteCarlo method

Unfortunately for you, there is a no-homework policy on this list. Please read the Posting Guide. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] issue on installation of RCurl on Debian Wheezy

Do you have curl installed? RCurl just uses your external-to-R system installation of the curl software to do its real work. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] ave(x, y, FUN=length) produces character output when x is character

But all numeric types in R are vectors. So although it might be a good idea to be redundant to aid beginners, the phrase a numeric is accurate. --- Jeff NewmillerThe . . Go Live

Re: [R] ave(x, y, FUN=length) produces character output when x is character

on this point. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] Question

in practically every email program... if yours really does not support it then you need to use another program. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] Changing UTC time to a time zone different from system time zone

commented, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Installation Help

Let windows prompt you for your password when it is needed... don't run anything as Administrator directly unless you are prepared to fix the problems that occur. --- Jeff Newmiller

Re: [R] FW: R demos or tutorials

into re-installing R from r--project.org. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] simplify code for dummy coding of factors

-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] rle with data.table - is it possible?

-- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. --- Jeff Newmiller

Re: [R] Can not save files

Because the root directory is not a place for saving your files in. Put your files in your Documents directory. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] Can not save files

) --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O

Re: [R] rle with data.table - is it possible?

are syntactically incorrect, and I don't understand what you hope to accomplish by assigning an empty string to a numeric in your last line. --- Jeff NewmillerThe . . Go Live... DCN:jdnew

Re: [R] Gains package installation error

Please don't cross post. You have your answer on crossvalidated. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] Help in building R with minGW

Please read the posting guide. This subject is off topic (should be on R-devel) and both this list and the R-devel list are plain-text-only mailing lists so your HTML is mangled. --- Jeff Newmiller

Re: [R] rle with data.table - is it possible?

RA C 1 10 On Fri, 2 Jan 2015, Jeff Newmiller wrote: The problem is that I cannot see how your use of rle and/or seq_along could possibly lead to the sample result you are giving us. That is why I asked for a new example

Re: [R] rle with data.table - is it possible?

The problem is that I cannot see how your use of rle and/or seq_along could possibly lead to the sample result you are giving us. That is why I asked for a new example. --- Jeff Newmiller

Re: [R] Package Build Suggestions

directory or let the user decide where to put it. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] FFT Normalization Documentation

. Best wishes, Frank --- Franklin Bretschneider Dept of Biology Utrecht University brets...@xs4all.nl --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] How to enable https for R 3.1.2 on windows 8.1

I am not aware that Windows demands double quotes for anything in R. I think the spaces was the problem. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.us

Re: [R] Updating to R 3.1.1. - impacts on existing packages

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO

Re: [R] the less-than-minus gotcha

the overloaded = from, say, Basic. I am sure you can get by with the syntactic overloading, but if you have the option of reducing ambiguity, why not use it? --- Jeff NewmillerThe . . Go

Re: [R] Error: OutOfMemoryError (Java): GC overhead limit exceeded

documentation on the X parameter). --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO

Re: [R] New to R

how to connect the dots using R. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] How to enable https for R 3.1.2 on windows 8.1

. http://curl.haxx.se/docs/faq.html --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live

Re: [R] rJava Scientific Linux 6.5 - Can not install

Don't know anything about SL but have you installed a Java run time independent of R? --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

Re: [R] FFT Normalization Documentation

, minimal, self-contained, reproducible code. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] How to check a regression model's fit?

. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing

Re: [R] Rotate array by 90°

?aperm aperm(A, c(2,1,3) )[,3:1,] --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go

Re: [R] AMBUR package will not build

You may be able to learn something useful from how the maptools package handles that dependency? --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics

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