Re: [R] joining files after canonical correlation

2005-05-29 Thread Uwe Ligges
Brett Stansfield wrote: Dear R, I recently did a canonical correlation analysis on two subsets of data (location and weather). So I now have canonical scores for location and weather. but I'd now like to do a scatterplot matrix using the pairs statement. Is there a way to somehow join location

Re: [R] Incompatibility with VGAM

2005-05-29 Thread Uwe Ligges
Thomas Yee wrote: Hello, It seems that if glm used a namespace then the conflict would be avoided? No. I already descibed why *not*, and I descibed how to work with stats' family functions even if VGAM has been loaded. Please reread my former message and tell me what was unclear. You might

[R] Re: Vector Manipulation

2005-05-29 Thread ManojW
OK...x[min(which(x!=0)):length(x)] does the trick! I guess the coffee is slowly but surely working! . Manoj - Original Message - From: ManojW To: R-help Sent: Monday, May 30, 2005 2:12 PM Subject: Re: Vector Manipulation I should clarify that I tried x[cumsum(x)!=0] but

[R] Re: Vector Manipulation

2005-05-29 Thread ManojW
I should clarify that I tried x[cumsum(x)!=0] but the problem is that I might have negative numbers in the vector that can potentially make cumsum(x) equal to zero somewhere down the line in the vector. Manoj - Original Message - From: ManojW To: R-help Sent: Monday, May 30, 2

[R] Vector Manipulation

2005-05-29 Thread ManojW
Dear All, For any given vector, I want to extract a sub-vector such that the new vector skips all zeros, if any , at the start of vector. Is it possible to achieve this w/o looping? E.G : >x= c(0,0,1,2,3,4,5,0,0,8,9) >y= somefunc(x); >

Re: [R] sapply following using by with a list of factors

2005-05-29 Thread Gabor Grothendieck
On 5/29/05, Gabor Grothendieck <[EMAIL PROTECTED]> wrote: > On 5/29/05, McClatchie, Sam (PIRSA-SARDI) > <[EMAIL PROTECTED]> wrote: > > Background: > > OS: Linux Mandrake 10.1 > > release: R 2.0.0 > > editor: GNU Emacs 21.3.2 > > front-end: ESS 5.2.3 > > - > > Colleag

Re: [R] sapply following using by with a list of factors

2005-05-29 Thread Gabor Grothendieck
On 5/29/05, McClatchie, Sam (PIRSA-SARDI) <[EMAIL PROTECTED]> wrote: > Background: > OS: Linux Mandrake 10.1 > release: R 2.0.0 > editor: GNU Emacs 21.3.2 > front-end: ESS 5.2.3 > - > Colleagues > > I am having some trouble extracting results from the function by, u

[R] sapply following using by with a list of factors

2005-05-29 Thread McClatchie, Sam (PIRSA-SARDI)
Background: OS: Linux Mandrake 10.1 release: R 2.0.0 editor: GNU Emacs 21.3.2 front-end: ESS 5.2.3 - Colleagues I am having some trouble extracting results from the function by, used to average variables in a data.frame first by one factor (depth) and then by a seco

RE: [R] Nomogram

2005-05-29 Thread Mulholland, Tom
I don't think Spencer replied to your message. It wasn't addressed to you. He was replying to a specific post on nomograms. However you might try being less specific as a search on "spatial cluster" gave back [R] mclust - clustering by spatial patterns http://finzi.psych.upenn.edu/R/Rhelp02a/a

RE: [R] trouble with cumsum?

2005-05-29 Thread luan_sheng
R help document showed us that you should not use "==" for comparing objects, and you will use "all.equal". -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Makram Talih Sent: Monday, May 30, 2005 8:17 AM To: r-help@stat.math.ethz.ch Subject: [R] trouble w

Re: [R] trouble with cumsum?

2005-05-29 Thread Dirk Eddelbuettel
On 29 May 2005 at 20:17, Makram Talih wrote: | Dear R users, | | I am using R version 2.0.1 (2004/11/15) on an i386-pc-mingw32 platform. I | encounter the following problem while using cumsum: | | > a <- rep(0.01, 100) | > b <- cumsum(a) | > sum(a) == 1 | [1] TRUE | > b[100] == 1 | [1] FALSE |

Re: [R] Nomogram

2005-05-29 Thread Rob Dunne
Spencer Graves wrote: From www.r-project.org -> search -> "R site search", I got 40 hits for "nomogram". The first one was for a function "nomogram" in the "Design" library. I haven't used it, but other people have, and some of the other 39 hits might answer other questions you might ha

[R] trouble with cumsum?

2005-05-29 Thread Makram Talih
Dear R users, I am using R version 2.0.1 (2004/11/15) on an i386-pc-mingw32 platform. I encounter the following problem while using cumsum: > a <- rep(0.01, 100) > b <- cumsum(a) > sum(a) == 1 [1] TRUE > b[100] == 1 [1] FALSE Am I missing something? Should cumsum have such an outcome? Thanks in

Re: [R] Nomogram

2005-05-29 Thread Spencer Graves
From www.r-project.org -> search -> "R site search", I got 40 hits for "nomogram". The first one was for a function "nomogram" in the "Design" library. I haven't used it, but other people have, and some of the other 39 hits might answer other questions you might have in trying to use it.

[R] Nomogram

2005-05-29 Thread Yongfei Wang
Hi, List: I heard some where about "nomogram" function in R, which package include this function? Thanks Yongfei __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R

[R] spatially constrained clustering

2005-05-29 Thread Rob Dunne
Hi List, does anyone know of an implementation of spatially constrained clustering in R? This is where there is a vector of measurements for points on a plane and only neighbors can be clustered together. I have tried implementint in myself -- but if someone has alkready done it ! I

Re: [R] Incompatibility with VGAM

2005-05-29 Thread Thomas Yee
Hello, It seems that if glm used a namespace then the conflict would be avoided? FYI, I released VGAM 0.6-3 last Friday which has binomial(), poisson() etc. removed so that it should no longer conflict with glm(). The families that work under VGAM are called binomialff(), poissonff() etc. Als

[R] joining files after canonical correlation

2005-05-29 Thread Brett Stansfield
Dear R, I recently did a canonical correlation analysis on two subsets of data (location and weather). So I now have canonical scores for location and weather. but I'd now like to do a scatterplot matrix using the pairs statement. Is there a way to somehow join location.U and weather.V to become

RE: [R] Errors in Variables

2005-05-29 Thread John Fox
Dear Spencer, > -Original Message- > From: Spencer Graves [mailto:[EMAIL PROTECTED] > Sent: Sunday, May 29, 2005 4:13 PM > To: John Fox > Cc: r-help@stat.math.ethz.ch; 'Jacob van Wyk'; 'Eric-Olivier Le Bigot' > Subject: Re: [R] Errors in Variables > > Hi, John: > > Thanks for th

Re: [R] Errors in Variables

2005-05-29 Thread Spencer Graves
Hi, John: Thanks for the clarification. I know that the "errors in X problem" requires additional information, most commonly one of the variances or the correlation. The question I saw (below) indicated he had tried "model of the form y ~ x (with a given covariance matrix ...)", which ma

Re: [R] get the bug context

2005-05-29 Thread Uwe Ligges
Luke wrote: Hi R-users, How to get a bug contex? My R code ran there for several hours, but a bug crashed it, printing such message like "Error: subscript out of bounds". I want to use browser() to catch the bug, but I don't know which loop caused the bug (there are many loops in the code). I

[R] get the bug context

2005-05-29 Thread Luke
Hi R-users, How to get a bug contex? My R code ran there for several hours, but a bug crashed it, printing such message like "Error: subscript out of bounds". I want to use browser() to catch the bug, but I don't know which loop caused the bug (there are many loops in the code). I even don't kno

Re: [R] R GUI for Linux?

2005-05-29 Thread Gabor Grothendieck
Check out the JGR link on the web page mentioned by Sander below. On 5/29/05, Sander Oom <[EMAIL PROTECTED]> wrote: > HI Robert, > > Of course Linux already has a console! Just type R in the Terminal > console and R will start (assuming all is installed correctly). Graphics > will be launched in

Re: [R] R GUI for Linux?

2005-05-29 Thread Dirk Eddelbuettel
On 29 May 2005 at 12:13, Robert Citek wrote: | | Hello all, | | I noticed that both Windows and OS X version of R have a GUI | (Rconsole). Is there a GUI for Linux? I'm running Debian on which | the CLI for R works just fine. $ apt-get install r-gnome ## works up until R 2.0.1 $ R --

Re: [R] Forcing ticks in plot for hclust object outside the limits

2005-05-29 Thread Aleš Žiberna
Thank you very much for your reply and your *dirty* sloution, which does the trick for me! Aleš Žiberna - Original Message - From: "Uwe Ligges" <[EMAIL PROTECTED]> To: "Aleš Žiberna" <[EMAIL PROTECTED]> Cc: "R-help" Sent: Saturday, May 28, 2005 7:58 PM Subject: Re: [R] Forcing ticks

Re: [R] R GUI for Linux?

2005-05-29 Thread Sander Oom
HI Robert, Of course Linux already has a console! Just type R in the Terminal console and R will start (assuming all is installed correctly). Graphics will be launched in separate windows. If you want more then the Terminal console, try: http://www.sciviews.org/_rgui/ Good luck, Sander. R

[R] R GUI for Linux?

2005-05-29 Thread Robert Citek
Hello all, I noticed that both Windows and OS X version of R have a GUI (Rconsole). Is there a GUI for Linux? I'm running Debian on which the CLI for R works just fine. Regards, - Robert __ R-help@stat.math.ethz.ch mailing list https://stat.et

RE: [R] "text"-function: adding text in an x,y-plot

2005-05-29 Thread John Fox
Dear Helmut, The problem is that you're implicitly coercing the entire data frame lab to character, producing > as.character(lab) [1] "c(1, 3, 4, 5, 6, 7, 8, 9, 10, 2)" The numbers themselves come from the numeric coding of the factor V1 in this data frame; as.numeric(lab$V1) shows you what's go

Re: [R] "text"-function: adding text in an x,y-plot

2005-05-29 Thread Uwe Ligges
Helmut Kudrnovsky wrote: Hello R-friends, i have a question to the "text"-function. a little test-dataset for better understanding: -the dataset was imported with read.table(,header=TRUE) s1-s10 are the samplenames var1 var2 var3 s1 112 s2 231 s3 22

[R] "text"-function: adding text in an x,y-plot

2005-05-29 Thread Helmut Kudrnovsky
Hello R-friends, i have a question to the "text"-function. a little test-dataset for better understanding: -the dataset was imported with read.table(,header=TRUE) s1-s10 are the samplenames var1 var2 var3 s1 112 s2 231 s3 223 s4 543 s5

Re: [R] Incompatibility with VGAM

2005-05-29 Thread Gabor Grothendieck
As a workaround you could try detaching and re-attaching vgam before and after running glm. detach("package:vgam") glm(...whatever...) library(vgam) On 5/28/05, Kjetil Brinchmann Halvorsen <[EMAIL PROTECTED]> wrote: > I just discovered that when the VGAM package (not on CRAN) is loaded, > glm()

Re: [R] Incompatibility with VGAM

2005-05-29 Thread Uwe Ligges
Kjetil Brinchmann Halvorsen wrote: I just discovered that when the VGAM package (not on CRAN) is loaded, glm() doesn't work. This is because VGAM defines a family function() which gets found by glm() in place of the family function from stats. Then VGAM:::family returns an object which doesn't

RE: [R] Errors in Variables

2005-05-29 Thread John Fox
Dear Spencer, The reason that I didn't respond to the original posting (I'm the author of the sem package), that that without additional information (such as the error variance of x), a model with error in both x and y will be underidentified (unless there are multiple indicators of x, which didn'

[R] Incompatibility with VGAM

2005-05-29 Thread Kjetil Brinchmann Halvorsen
I just discovered that when the VGAM package (not on CRAN) is loaded, glm() doesn't work. This is because VGAM defines a family function() which gets found by glm() in place of the family function from stats. Then VGAM:::family returns an object which doesn't have a $family component, (it has a