Re: [R-pkg-devel] Help needed with CRAN check error under MacOS and old-rel

2024-06-30 Thread Spencer Graves
e and added a small test cases to add to the examples of the problem function. Then I fixed the problem (with help from Ivan Krylov on this list). hope this helps. spencer graves [1] https://github.com/aphalo/ggpp On 6/30/24 04:17, Aphalo, Pedro J wrote: Hello, A few

Re: [R-pkg-devel] Vignette error: "there is no package called 'markdown'"

2024-06-29 Thread Spencer Graves
ri, 28 Jun 2024 22:55:23 -0500 Spencer Graves пишет: I'm getting, "Error: processing vignette 'sos.Rmd' failed with diagnostics: there is no package called 'markdown'": https://github.com/sbgraves237/sos/actions/runs/9721300082/job/26833793243

[R-pkg-devel] Vignette error: "there is no package called 'markdown'"

2024-06-28 Thread Spencer Graves
graves237/sos/blob/master/vignettes/sos.Rmd This package has been on CRAN with a vignette since 2009. To isolate a new bug, I tried to translate the vignette from Sweave to RMarkdown. I've cut the vignette to almost nothing and still cannot see what's wrong. Suggestion

Re: [R-pkg-devel] Package bioOED has been removed from CRAN just for personal reasons

2023-11-02 Thread Spencer Graves
d others. When the tone seemed less supportive or even insulting, I'm very glad the person took the time to comment and didn't decide not to reply for fear of offending me. I'm more productive and a better human for all the help I've gotten from this and other R-related lists

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-24 Thread Spencer Graves
ot;a while" to run }) Have you tried writing directly to Jennifer Bryan ? She and Hadley might be able to get help from the CRAN maintainers in getting help with this particular problem AND getting more documentation on this in their book ;-) hope this helps. spen

Re: [R-pkg-devel] URL syntax causes R CMD build failure - a fix

2023-09-02 Thread Spencer Graves
I've encountered similar issues. However, it has been long enough ago that I don't remember enough details to say more without trying to update my CRAN packages to see what messages I get and maybe researching my notes from previous problems of this nature. Spencer Graves On 9/2/

[R-pkg-devel] gfortran: command not found

2023-07-05 Thread Spencer Graves
n: No such file or directory make: *** [approx.o] Error 1 ERROR: compilation failed for package ‘KFAS' My web search suggests several different ways to fix this problem, but I don't know which to try. Suggestions? Thanks, Spencer Graves p.s. I have b

Re: [R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
reen button? Got it. I pushed another change, and that triggered GitHub Action. Thanks again, Spencer Graves Best El mié, 5 jul 2023 a las 23:45, Spencer Graves (<mailto:spencer.gra...@effectivedefense.org>>) escribió: Hello:           Can someone h

[R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
Hello: Can someone help me understand why a commit to "https://github.com/sbgraves237/KFAS"; does not trigger the GitHub Actions specified in ".github/workflows/check-standard.yaml"? Thanks, Spencer Graves p.s. This is a branch of helske/KF

Re: [R-pkg-devel] Change package name

2023-06-21 Thread Spencer Graves
enhancement. Then I added something like ".onAttach" to "RSiteSearch" and kept it on CRAN for a couple of years after introducing "sos". That allowed people to use the old package for a couple of years without forcing them to switch immediately.

[R-pkg-devel] masked from 'package:utils':,, ?-2

2023-05-23 Thread Spencer Graves
only a NOTE, so CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves [1] https://cran.r-project

[R-pkg-devel] masked from 'package:utils':,, ?

2023-05-23 Thread Spencer Graves
only a NOTE, so CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves __ R-

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-23 Thread Spencer Graves
to Duncan, Ivan, Vincent and Uwe, who contributed to this thread and the resolution of this problem. Spencer Graves Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-22 Thread Spencer Graves
Suggestions? Thanks Spencer Graves On 5/16/23 7:41 AM, Uwe Ligges wrote: On 16.05.2023 14:02, Spencer Graves wrote: On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, co

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-22 Thread Spencer Graves
f the vignette available on CRAN.[1] The text of sos.Rnw is available on GitHub.[2] I am not eager to change the code in the package, because it could break something else that's currently working. Suggestions? Thanks, Spencer Graves [1] https://cran.

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-16 Thread Spencer Graves
On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, complaining:[1] LaTeX errors: ! Missing $ inserted. $ l.303 {\tt pspline_     checker} in the I can only

[R-pkg-devel] help fixing CRAN package sos

2023-05-15 Thread Spencer Graves
ect: Re: CRAN package sos Date: Sun, 14 May 2023 14:46:06 +0100 From: Prof Brian Ripley Reply-To: CRAN To: Spencer Graves CC: c...@r-project.org On 12/05/2023 13:03, Spencer Graves wrote: Hello, All: You have just spammed my personal email address, contrary to the CRAN policy and done so

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-21 Thread Spencer Graves
However, if CRAN is rejecting your package on GitHub Action, a question about that to this list might help make it available. If you have special Ubuntu configuration issues that are not provided in the standard GitHub Action configurations, asking here might help you with that.

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-20 Thread Spencer Graves
buntu would catch the problem that CRAN is catching on Debian. However, having the package on GitHub also makes it easier for someone else to clone the package and test it it for you ;-) This community of R developers provides very valuable support for problems like this.

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
On 1/20/23 7:32 PM, Duncan Murdoch wrote: On 20/01/2023 8:16 p.m., Spencer Graves wrote: Hello, All:   My attempts to fix this problem exposed what seems to be a completely unrelated problem:  All five GitHub Actions end now with: Error: package or namespace load failed for ‘fda

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
tent.com/JamesRamsay5/fda/master/NAMESPACE') 1: export(AmpPhasDecomp, rawToChar(readBin(' https://raw.githubusercontent.com/JamesRamsay5/fda/master/NAMESPACE', what="raw", n=20)) [1] "\357\273\277export(AmpPhasDec" -Bill On Fri, Jan 20, 2023 at 9:16 AM Spencer Graves <

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
Hi, Ivan and Uwe: Thanks for your suggestions, but I've so far been unable to get them to work. see below. On 1/20/23 9:22 AM, Uwe Ligges wrote: On 20.01.2023 15:53, Ivan Krylov wrote: В Fri, 20 Jan 2023 08:41:25 -0600 Spencer Graves пишет: ** byte-compile and prepare packag

[R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
NULL) : 1:1: unexpected input That's the same error I've gotten with "R CMD build fda" locally. Suggestions? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
buse my of this part of my ignorance. Spencer Best,   Kevin On Sun, Jan 8, 2023, 11:30 AM Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote:           If you use GitHub, I highly recommend using "GitHub Action" as described by W

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
ample workflows in: https://github.com/r-lib/actions/blob/v2-branch/examples/check-standard.yaml I also needed LaTeX support, for which Gábor suggested the following: https://github.com/r-lib/actions/tree/v2/setup-tinytex#ctan-packages Spencer Graves On 1/8/23 9:

Re: [R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
n successfully on Unbuntu as well as Windows and macOS. However, Ubuntu failed with devel and oldrel1, complaining, "there is no package called ‘rcmdcheck’". See: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer Grav

[R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
I would happily rtfm if I only knew which fmtr. Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] How to reduce examples in a package that takes more than 5 seconds to run?

2022-12-15 Thread Spencer Graves
https://github.com/sbgraves237/sos/blob/master/man/findFn.Rd Hope this helps. Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel ___

Re: [R-pkg-devel] Error uploading file on CRAN

2022-11-27 Thread Spencer Graves
urrent status of one such file, see: https://github.com/sbgraves237/Ecdat/blob/master/Ecdat_release_to_CRAN.R Hope this helps. Spencer Graves I look forward to hearing from you. Thanking you and sincerely Havisha Jahajeeah On Mon, Nov 7, 2022 at 12:30 PM Jahajeeah, Hav

Re: [R-pkg-devel] Problems with news in ‘NEWS’

2022-10-13 Thread Spencer Graves
On 10/13/22 4:34 AM, Ivan Krylov wrote: В Wed, 12 Oct 2022 20:16:20 -0500 Spencer Graves пишет: I copied NEWS to NEWS.md and tried to format it as described in: https://r-pkgs.org/other-markdown.html#news Sadly, I still get the same error. It seems to be ignoring my NEWS.md

[R-pkg-devel] Problems with news in ‘NEWS’

2022-10-12 Thread Spencer Graves
I haven't fixed NEWS. What do you suggest? Thanks, Spencer Graves Forwarded Message Subject:Ecdat 0.4-2: NOTE Date: Thu, 13 Oct 2022 00:55:10 + From: R-hub builder To: spencer.gra...@effectivedefense.org Ecdat 0.4-2: NOTE

Re: [R-pkg-devel] Misspelled words in descrition and tar.gz inside folder

2022-08-10 Thread Spencer Graves
ot;inst" folder. Below please find notes I've prepared for myself on the various tests I've gotten from their book, etc. The section numbers refer to an earlier version of this book. Ignore or use with caution. Hope this helps. Spencer Graves # File &g

[R-pkg-devel] Thanks -- success after 4 package submissions in 3 days

2022-07-23 Thread Spencer Graves
that are more easily fixed. Spencer Graves On 7/20/22 11:50 AM, Uwe Ligges wrote: Or simply read ?news which explains how the three formats (plain text NEWS, NEWS.Rd and NEWS.md) should look like. Best, Uwe Ligges On 20.07.2022 03:27, Max Turgeon wrote: Hi Spencer, This NOTE

Re: [R-pkg-devel] Warning... unable to translate 'Ekstrm' to a wide string; Error... input string 1 is invalid

2022-07-19 Thread Spencer Graves
Hi, Ivan et al.: On 7/19/22 1:03 PM, Ivan Krylov wrote: On Tue, 19 Jul 2022 12:32:20 -0500 Spencer Graves wrote: Can someone provide me with a link to the correct development version of help('iconv')? The current version includes the exact offending "\x" strings that I

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 5:05 PM, Duncan Murdoch wrote: On 13/06/2022 5:11 p.m., Spencer Graves wrote: On 6/13/22 1:26 PM, Duncan Murdoch wrote: On 13/06/2022 12:12 p.m., Spencer Graves wrote: Hello, All:    How do I fix "Rd cross-references ... NOTE Undeclared packages ‘EnvStats’, ‘drc’,

[R-pkg-devel] NOTE: Escaped LaTeX specials: \$

2022-06-13 Thread Spencer Graves
replace "\$1,000" with "1,000 US dollars", and "R\&D" could be replaced with "R and D". However, a dataset "Benefits" includes a column that is "a factor with levels (slack\_work,position\_abolished,seasonal\_job\_ended,other)&

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 2:22 PM, Ivan Krylov wrote: On Mon, 13 Jun 2022 13:59:24 -0500 Spencer Graves wrote: I probably should have just used "Suggests" and not bothered this list with this issue. Why not use the \link{foo} form and let the HTML help system resolve the link at run t

Re: [R-pkg-devel] GitHub error

2022-04-20 Thread Spencer Graves
Hi, Andrew: Thanks. I think that was exactly what I needed: I was in particular unsure about "git push --force". Spencer Graves On 4/20/22 8:22 PM, Andrew Simmons wrote: Not really the place for this type of thing, but here's what I'd do: add .DS_Store to your .

Re: [R-pkg-devel] doi confusion and Data codoc mismatches--AND THE VALUE OF GITHUB

2022-01-04 Thread Spencer Graves
ld appear in R 4.2.0 or maybe some 4.1.x release.  Thanks Kurt! Duncan Murdoch Duncan Murdoch On 26/12/2021 5:55 a.m., Duncan Murdoch wrote: On 26/12/2021 12:07 a.m., Spencer Graves wrote: Hello, All:   The latest checks on "https://github.com/sbgraves237/Ecdat/runs/4634725654?ch

[R-pkg-devel] doi confusion and Data codoc mismatches-confusing check

2021-12-26 Thread Spencer Graves
UMS USA: Version 8.0 [dataset]. Minneapolis, MN: IPUMS." does nothing, whild clicking on "doi: 10.18128/D010.V8.0" takes me to that URL. This looks like a change to how *.Rd files are rendered that has appeared in the process on GitHub but not in my local computer. ???

[R-pkg-devel] doi confusion and Data codoc mismatches

2021-12-25 Thread Spencer Graves
.0}{text to display to click to link to the doi url}. If it were, e.g., \url{https://doi.org/10.18128/D010.V8.0} I would try replacing it with \doi{10.18128/D010.V8.0}. However, if I do that, I don't know what to do with the "text to display to click to link to the doi url".

Re: [R-pkg-devel] [External] Re: What is a "retired"package?

2021-09-22 Thread Spencer Graves
On 9/22/21 2:38 AM, Martin Maechler wrote: Lenth, Russell V on Tue, 21 Sep 2021 18:43:07 + writes: > As I suspected, and a good point. But please note that the term "retired" causes angst, and it may be good to change that to "superceded" or something else. well, some of us

Re: [R-pkg-devel] Change package maintainer

2021-07-02 Thread Spencer Graves
I can suggest one example: multcompView: I created it during or before 2006 and passed it during or before 2011 to Luciano Selzer . I do not remember the exact process, and procedures could have changed since then. However, I think I remember communicating with the CRAN maintainers after

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test") : 'vign_test' already exists

2021-06-29 Thread Spencer Graves
It's available at: https://github.com/sbgraves237/Ecfun This passed all 4 GitHub Actions, so maybe I should not worry about this. Comments? Thanks, Spencer Graves sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bi

Re: [R-pkg-devel] How to communicate WARNINGS fixed from *last* CRAN version of a package

2021-06-22 Thread Spencer Graves
_check() Hope this helps. Spencer Graves On 6/22/21 6:53 AM, Alberto Garre wrote: Thanks. I just "replied-to-all" again. Gmail then sends the email to cran-submissi...@r-project.org. Is this the correct address? El mar, 22 jun 2021 a las 12:38, Georgi Boshna

Re: [R-pkg-devel] Question about preventing CRAN package archival

2021-06-02 Thread Spencer Graves
The CRAN maintainers almost certainly have tried to contact the maintainer. You can ask if he plans to fix the bug. If not, if it's that easy to fix, you could offer to both the maintainers of both matrixcalc and CRAN to take over maintenance. Spencer On 6/2/21 2:41 PM, Roy M

Re: [R-pkg-devel] \donttest{} and writing outputs to tempdir()

2021-06-02 Thread Spencer Graves
You surely should be able to have some examples that would run in less than 5 seconds. I almost never use "donttest". Instead I use conditional skips, and those only on examples that I believe are likely to run too long. In those cases, I believe the standard recommendation is:

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-25 Thread Spencer Graves
I will try to understand it and fix it myself. However, I really don't understand the code, and you certainly did when you wrote it ;-) Thanks, Spencer Graves On 5/24/21 10:35 AM, Duncan Murdoch wrote: On 24/05/2021 10:17 a.m., Spencer Graves wrote: Hi, Duncan:  

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-24 Thread Spencer Graves
e fda dependency, but make the test conditional, i.e. change  if (fda::CRAN()) to  if (requireNamespace("fda") && fda::CRAN()) I'd do number 1, or just assume everything is being run on CRAN. Duncan Murdoch On 23/05/2021 6:49 p.m., Spencer Graves wrote: Hi, Duncan e

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
on_cran". Again, I really appreciate the help. Spencer On 5/23/21 4:44 PM, Duncan Murdoch wrote: I don't see where the connection is, but it's almost certainly coming in through your unconditional use of "fda::CRAN()".  Since "fda" is not

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
rets.GITHUB_TOKEN }}   RGL_USE_NULL: true The last line might be enough for you, but I think the 2nd line _R_CHECK_FORCE_SUGGESTS_: false may be more important:  you use ks, it imports plot3D, plot3D imports misc3d, but it only suggests rgl and tkrplot:  so that would let ks load wit

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
  tinytex::parse_install(      text = "! LaTeX Error: File `tikz.sty' not found."   )     shell: Rscript {0} Duncan Murdoch On 23/05/2021 11:28 a.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks very much to Duncan for his suggestion.  I did

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
://github.com/r-lib/actions, and I did some other searches without figuring out how to fix "`tikz.sty' not found." For more details, see: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer On 5/23/21 4:43 AM, Duncan Murdo

[R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-22 Thread Spencer Graves
d anywhere in your PATH, and texi2dvi cannot proceed without one. The error message under Windows seemed crudely similar but different: * Error: processing vignette 'sos.Rnw' failed with diagnostics: pdflatex is not available

Re: [R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-20 Thread Spencer Graves
t add" and "git commit" .github". * And when using "usethis::use_readme_rmd()", I initially missed the need to "knit" the file to produce the README.md. Spencer Graves On 5/13/21 7:04 PM, Ben Bolker wrote:   GitHub Actions   ?usethis::use_

[R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-13 Thread Spencer Graves
t;Run usethis::use_travis()".[1] However, 'help("use_travis", package="usethis")' says it's deprecated, but I don't understand what is recommended as an alternative. What do you suggest? Thanks, Sp

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-17 Thread Spencer Graves
tten someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has.  However, you might see how difficult it might be to do without "gdata" as well.    Spencer Graves    Is it permissible to copy the code from rename.vars (gdata) i

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-15 Thread Spencer Graves
06 and a huge number of reverse dependencies. The CRAN maintainers may have gotten someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has. However, you might see how difficult it might be to do without "gdata" as well. Spencer G

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
On 2020-12-12 19:50, Duncan Murdoch wrote: On 12/12/2020 6:01 p.m., Ben Bolker wrote: On 12/12/20 5:50 PM, Duncan Murdoch wrote: On 12/12/2020 4:08 p.m., Spencer Graves wrote: Hi, Ben et al.: On 2020-12-12 13:43, Ben Bolker wrote:      Apologies if I'm telling you somethin

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
and more easily broken in ways that I can no longer easily test. Spencer On 12/12/20 2:19 PM, Spencer Graves wrote:    I have tests in my code to detect when something like that is not available.    I also have code in "\examples" to skip tests that would en

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
I have tests in my code to detect when something like that is not available. I also have code in "\examples" to skip tests that would encounter that. Hadley's "testthhat:skip_on_cran" is supposed to suppress tests like that on CRAN. I have so far failed to understand how to use t

[R-pkg-devel] devtools::release() does not release

2020-11-26 Thread Spencer Graves
the entire devtools::release() transcript, it appears below running under Big Sur on a Mac. Suggestions? Thanks, Spencer Graves & Jim Ramsay —— devtools::release() Have you checked for spelling errors (with `spell_check()`)? 1: Not yet 2: Nope 3: A

[R-pkg-devel] RMarkdown vignettes with Wikiversity?

2020-10-22 Thread Spencer Graves
//en.wikiversity.org/wiki/User_talk:Dave_Braunschweig#RMarkdown_vignettes_with_Wikiversity? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] "--resave-data" doesn't work

2020-10-22 Thread Spencer Graves
". This is AFTER I do "R CMD build Ecdat --resave-data". What do you suggest I do to get past this problem? Thanks, Spencer Graves p.s. My ".travis.yml" file ends with "r_build_args: --resave-data". I had trouble

Re: [R-pkg-devel] CRAN pending status , left up in the air

2020-10-19 Thread Spencer Graves
ime. Each package maintainer would be asked to specify at least one "Task View" for each package and be willing to discuss overlap, etc., with others. This might be a topic for the next useR conference. Comments? Best Wishes, Spencer Graves best

Re: [R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-16 Thread Spencer Graves
On 2020-10-11 10:34, Enrico Schumann wrote: On Sat, 10 Oct 2020, Spencer Graves writes: Hello, All: "R CMD check Ecfun_0.2-4.tar.gz" fails under Windows 10 with "Error: package or namespace load failed for 'Ecfun': .onLoad failed in l

[R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-10 Thread Spencer Graves
: https://github.com/sbgraves237/Ecfun I get nothing from "grep 'rJava'" in the DESCRIPTION and NAMESPACE files plus in the man and R subdirectories. I ran tools:package_dependencies recursively starting with Ecfun until I got all NULLs and could not find r

Re: [R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
;t plot unless people run them manually. Or maybe I shouldn't be trying to distribute vignettes like this. Thanks for the reply. Spencer On Tue, 22 Sep 2020 at 5:04 pm, Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote: Hell

[R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
Hello, All: R CMD check of "https://github.com/sbgraves237/Ecfun"; on Mac produces the following NOTE: * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 5.2Mb It doesn't do that with Travis CI[1] nor on a Windows 10 comp

Re: [R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
tion fixed the UTF-8 problem and Travis confirmed that it can't make "--resave-data" work, either ;-)  If a CRAN maintainer complains about the compression problem, I can report what I tried and see what they suggest.   Thanks again,       Spencer Graves On 2020-07-17 04:10

Re: [R-pkg-devel] Note: information on .o files is not available / Found '_exit', possibly from '_exit' (C)

2020-07-17 Thread Spencer Graves
  Can you run the checks only on the subdirectory containing the compiled code?  If yes, then you can run it only on half of that directory and identify it with a binary search.   Some years ago, I found a particularly difficult bug that way.  If I recall correctly, I made a copy of t

[R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
d Ecdat --data-compress" and got the same result.   Suggestions?   Thanks,   Spencer Graves sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.5 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versi

Re: [R-pkg-devel] email misleading: checking CRAN incoming feasibility ... NOTE Maintainer

2020-06-08 Thread Spencer Graves
me, and I haven't found anything better.  I've recently seen "testthat::skip_on_cran(...)", but I have yet to understand enough of how it works to actually use it.   Thanks,   Spencer Graves On 2020-06-08 09:43, stefano wrote: Hello Uwe, OK sorry for that.

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 14:24, Avraham Adler wrote: > > > On Tue, Jun 2, 2020 at 5:04 PM Spencer Graves > <mailto:spencer.gra...@effectivedefense.org>> wrote: > > QUESTION:  How much money have people on this list received for what > > they've written?  I'

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 10:14, Adelchi Azzalini wrote: In general, "check the license" is a very sensible indication. In the specific case, the Matlab code comes with no licence indication - nothing.   I'm not an attorney, but it's my understanding that "no license indication" is a legal mi

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
e the world is invited to provide credible source(s).   Spencer Graves On 2020-06-02 10:12, Dirk Eddelbuettel wrote: On 2 June 2020 at 10:06, R. Mark Sharp wrote: | The GPL-2 and GPL-3 licenses are apparently sufficiently ambiguous in the legal community that some companies avoid them. Wittge

Re: [R-pkg-devel] [BULK] Re: [Rd] "not a valid win32 application" with rtools40-x86_65.exe on Windows 10

2020-05-11 Thread Spencer Graves
al(now), ...)    error:  unable to load shared object 'c:/Program Files/R/R-4.0.0/library/rJava/libs/i386/rJava.dll':    LoadLibrary failure: ^1 is not a valid win32 application   The same package on my Mac quits with a LaTeX error I have yet to figure out how to fix.   Sug

Re: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build

2020-05-01 Thread Spencer Graves
lar signs to a LaTeX processor.  If you already know this, I apologize for wasting your time with this reply.  If you did not know this, it might help you understand the problem.  Spencer Graves On 2020-05-01 14:39, Max Turgeon wrote: > Since you're looking for suggestions and that&#x

Re: [R-pkg-devel] More GitHub problems

2020-04-21 Thread Spencer Graves
Hi, Ivan et al: On 2020-04-21 02:15, Ivan Krylov wrote: On Mon, 20 Apr 2020 23:44:43 -0500 Spencer Graves wrote: Is there a way to restore the functionality of a local clone of a GitHub repository after the SSH key it used was replaced? Does `git remote -v` in the repo directory show https

[R-pkg-devel] More GitHub problems

2020-04-20 Thread Spencer Graves
  Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
I had SSH. � Thanks again, ����� Spencer Graves On 2020-04-03 15:17, Max Turgeon wrote: > > Hi Spencer, > > > Did you follow the instructions here? > https://help.github.com/en/github/authenticating-to-github/connecting-to-github-with-ssh > > > Once the key is setup, you

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
do "git commit" and "git push".   However, this has my GitHub password in a plain text ".git" file on my hard drive.  I think the hard drive on my computer is encrypted, so maybe that's not a problem.   Am I not allowed to use SSH with a GitHub repo

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test"): 'vign_test' already exists

2020-03-15 Thread Spencer Graves
  Under macOS 10.15.3 it finishes fine.   "grep 'vign_test'" failed to find anything.   ???   Thanks,   Spencer Graves p.s.  Running R 3.6.3 on both machines with "update.packates()" clean. __ R-packa

Re: [R-pkg-devel] GitHub problems

2020-03-14 Thread Spencer Graves
s associated with git. > > > > On Sat, 14 Mar 2020 at 2:14 pm, Spencer Graves > <mailto:spencer.gra...@effectivedefense.org>> wrote: > > Hello, All: > > >    What do you suggest Jim Ramsay and I do to migrate the fda > package to GitH

[R-pkg-devel] GitHub problems

2020-03-13 Thread Spencer Graves
uldn't let me: SpenceravessMBP:fda sbgraves$ git push remote: Permission to JamesRamsay5/fda.git denied to sbgraves237. fatal: unable to access 'https://892da70262d9a4faa857b8602145414d6b210...@github.com/JamesRamsay5/fda/': The requested URL returned er

[R-pkg-devel] Internet security software?

2020-02-24 Thread Spencer Graves
t I know that some are, and Bitdefender tech support answers the phone but fails to fix these problems.   Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] MiKTex v. TeX Live?

2020-02-24 Thread Spencer Graves
anti-virus would not by default identify as part of the operating system.   Suggestions?   Thanks,   Spencer Graves p.s.  This is using R 2.6.2 immediately after running "update.packages()". __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] Error: Symbol \textasciigrave not provided by (textcomp)

2020-02-16 Thread Spencer Graves
nStandardNames.Rd".  Those functions were written to fix parsing errors with names like "Raúl" that had been mangled by different software before I could get it into R.   After a day's work failed to produce a work around, I decided to ask this group.   What do

[R-pkg-devel] revdepcheck::revdep_check interpretation problem

2020-02-10 Thread Spencer Graves
am/magclass    Tools for managing classroom organizations 2: tscheypidi/magclass  Tools for managing classroom organizations 3: rundel/ghclass   Tools for managing classroom organizations   ** None of that sounds like "gamclass".   What do you suggest?   I should probably ign

[R-pkg-devel] finding "logo.jpg" [was: "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC]

2020-02-03 Thread Spencer Graves
ich of these is the case.   I should proceed to submit the current Ecfun package to CRAN. Then I might modify this test sequence to force an error, so I can see more what is happening.   Suggestions?   Thanks,   Spencer On 2020-02-03 03:06, Iñaki Ucar wrote: On Mon, 3 Feb 2020 at

Re: [R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
Hi, Dirk:   The short answer is that's part of what's on "rhub".   When I run devtools::check_rhub, I get emails with test results from three platforms:  (1) Windows Server 2008 R2 SP1, R-devel, 32/64 bit.  (2) Ubuntu Linux 16.04 LTS, R-release, GCC. And (3) Fedora Linux, R-devel, c

[R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
ent version of Ecfun, which I want to submit to CRAN as soon as I can do so without offending the sensibilities of the overworked CRAN maintainers.   Suggestions?   Thanks,   Spencer Graves Forwarded Message Subject:Ecfun 0.2-2: ERROR Date: Sun, 02 Feb

Re: [R-pkg-devel] CRAN rules re. web scraping?

2020-01-23 Thread Spencer Graves
https://github.com/sbgraves237/Ecfun".  The package still needs more work, but I will make Prof. Ripley's Feb. 4 deadline.   Thanks again,   Spencer Graves On 2020-01-23 01:55, Iñaki Ucar wrote: On Thu, 23 Jan 2020 at 02:49, Spencer Graves wrote: Hello, All: GOOD NE

[R-pkg-devel] CRAN rules re. web scraping?

2020-01-22 Thread Spencer Graves
lected tests not to run on CRAN, e.g., with (!fda::CRAN()).   However, I suspect I should be able to do better than that.   Suggestions?   Thanks,   Spencer Graves p.s.  The development version of this package is available at "https://github.com/sbgrav

Re: [R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
ot; Gabor   Thanks.  I now have "https://github.com/sbgraves237/fda";. Then I did "git push --set-upstream origin master", and it seemed to work.   Thanks again.   Spencer On Wed, Jan 15, 2020 at 11:15 PM Spencer Graves wrote: Hello, All: How can I

[R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
nd. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists.   *** What do I need to do to fix the mess I seem to have created and get what I want?   *** Thanks, Spencer Graves p.s.  If you know the fda package,

[R-pkg-devel] default col.names from data.frame not the same as as.data.frame

2019-12-10 Thread Spencer Graves
t; but "as.data.frame(matrix(1:2, 1))" defaults to "V1", "V2".         * I want to use a toy example like this in the documentation for "BMA:::bic.glm.matrix" and "BMA:::bic.glm.data.frame", and since "base" R is inco

Re: [R-pkg-devel] compression of vignettes

2019-11-24 Thread Spencer Graves
ar.gz" included the following: * checking installed package size ... NOTE   installed size is  7.2Mb   sub-directories of 1Mb or more:     doc   6.6Mb   Suggestions?   Thanks,   Spencer Graves On 2019-11-21 11:43, Dirk Eddelbuettel wrote: On 21 November 2019 at 16:43,

[R-pkg-devel] devtools::build_win()?

2019-10-31 Thread Spencer Graves
f "devtools::revdep_check()" seems only to identify the reverse dependencies without testing them.   That do you suggest?   Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] How to submit to CRAN from GitHub?

2019-09-22 Thread Spencer Graves
anything I understand how to change. NOTE:  "R CMD build Ecdat --resave-data" followed by "R CMD check Ecdat_0.3.3-tar.gz" completed with no errors, warnings or notes under macOS 10.14.6 and Windows 7 and 10.   Thanks,   Spencer Graves Forwarded Mess

  1   2   >