Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

What happens if you import RDKit into a regular python shell without mod_wsgion this computer? If this works than the mod_wsgi python maybe runs on another python interpreter.On Tue, 10 Sep 2013 16:08:24 -0400, Michał Nowotka wrote:Believe me, I restarted it many times :)On Tue, Sep 10, 2013 at 1

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Some kind of an answer seems to be already given at Stackoverflow. I would add two comments: 1) Unless there are some specific problems with this you can add new library system-wide through ld.so.conf 2) You did not mention what your log files say but I would experiment with Selinux switched off.

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Maybe move the rdkit libs into some folder within apache DocumentRoot? Did you restart apache after syncing the libraries? On Tue, Sep 10, 2013 at 3:58 PM, Michał Nowotka wrote: > Yes, I mean even RDKit. > > No, the trouble maker has exactly the same system. The only difference is > that in ord

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Thanks for advices. Unfortunately I can't do anything system-wide as I don't have administrator privileges on the server. Than also means I can't switch selinux. On Tue, Sep 10, 2013 at 7:59 PM, Igor Filippov wrote: > Some kind of an answer seems to be already given at Stackoverflow. > I would a

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Believe me, I restarted it many times :) On Tue, Sep 10, 2013 at 10:06 PM, Igor Filippov wrote: > Maybe move the rdkit libs into some folder within apache DocumentRoot? > Did you restart apache after syncing the libraries? > > > On Tue, Sep 10, 2013 at 3:58 PM, Michał Nowotka wrote: > >> Yes, I

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Yes, I can. What is more important I successfully managed to run other libraries with extensions in C (indigo toolkit, cx_Oracle). What is even more important the same configuration (at least it seems to be the same) works on other machines. Unfortunately I don't know how to debug to find source of

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

How far is your setup working so far? Can you already run python scriptsvia mod_wsgi without importing rdkit? On Tue, 10 Sep 2013 15:29:07 -0400, Michał Nowotka wrote:Yes: python, mod_wsgi, vitualenv, RHELOn Tue, Sep 10, 2013 at 9:22 PM, Markus Sitzmann wrote: Are you

[Rdkit-discuss] problem with RDKit configuration on apache and wsgi

I have some problems with configuring apache to use rdkit, this is described in SO question: http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library Any help would be appreciated! Regards, Michał Nowotka ---

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Yes, I mean even RDKit. No, the trouble maker has exactly the same system. The only difference is that in order to install my app on other machines I was using fabric and on the problematic machines I just rsynced directories from working machines. The only error in error_log is: ImportError: li

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

So you mean, you have even RDKit running with this setup on other machinesor just the other libraries.If "other machines" vs the trouble maker machine includes a change from RH5 to RH6 than indeed I would suspect SELinux as Igor suggested. Don't ask mefor a solution except for switching it off.Is

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Yes: python, mod_wsgi, vitualenv, RHEL On Tue, Sep 10, 2013 at 9:22 PM, Markus Sitzmann wrote: > ** > Are you trying to use it with python/mod_wsgi? Your description so far is > a bit vague :-) > > Markus > > On Tue, 10 Sep 2013 15:00:55 -0400, Michał Nowotka > wrote: > > Thanks for advices. Un

Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi

Are you trying to use it with python/mod_wsgi? Your description so far is a bit vague :-)MarkusOn Tue, 10 Sep 2013 15:00:55 -0400, Michał Nowotka wrote:Thanks for advices. Unfortunately I can't do anything system-wide as I don't have administrator privileges on the server. Than also means I can't