[slurm-dev] Re: shellshock patch uses a different function export, caused some errors on our Slurm cluster

2014-09-29 Thread John Brunelle
On Sun, Sep 28, 2014 at 5:53 AM, Marcin Stolarek stolarek.mar...@gmail.com wrote: Does I understood you correctly, that it's able to start interactive shell with: srun --pty bash in yours configuration and because this is non-login shell the environment have to be set on submit host? We

[slurm-dev] Re: shellshock patch uses a different function export, caused some errors on our Slurm cluster

2014-09-29 Thread John Brunelle
On Mon, Sep 29, 2014 at 1:27 AM, Christopher Samuel sam...@unimelb.edu.au wrote: B) If you update a compute node when there are jobs queued under the previous bash then they will fail when they run there (also cannot find modules, even though a prologue of ours sets BASH_ENV to force the env

[slurm-dev] shellshock patch uses a different function export, caused some errors on our Slurm cluster

2014-09-26 Thread John Brunelle
://rc.fas.harvard.edu/shellshock-update-issue-temporarily-affecting-slurm-jobs-software-modules/ Hope that helps someone, John John Brunelle Harvard University FAS Research Computing, Informatics and Scientific Applications john_brune...@harvard.edu @jabrcx