>
> The user added
>
> #SBATCH --export=none
>
> to his submission script to prevent any environment variables in the GUI's
> environment from being applied to his job. After making that change, his job
> worked as expected, so this confirmed it was an environment issue. We
> compared the dif
On 3/28/19 1:25 PM, Reuti wrote:
Hi,
Am 22.03.2019 um 16:20 schrieb Prentice Bisbal :
On 3/21/19 6:56 PM, Reuti wrote:
Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
Slurm-users,
My users here have developed a GUI application which serves as a GUI interface
to various physics codes they
Hi,
> Am 22.03.2019 um 16:20 schrieb Prentice Bisbal :
>
> On 3/21/19 6:56 PM, Reuti wrote:
>> Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
>>
>>> Slurm-users,
>>>
>>> My users here have developed a GUI application which serves as a GUI
>>> interface to various physics codes they use. From
Slurm is almost certainly calling execve() with the path to a copy of this
script as an argument eventually, so yes, tcsh will be noticed by the Linux
kernel as the first line and invoked to handle the contents. Slurm doesn’t have
to honor it since the kernel will. Slurm, usually makes a pass th
Does the GUI run as the user (e.g. the user starts the GUI, and so
submitting process is owned by user), or is the GUI running as a daemon (in
which case, is it submitting jobs as the user and if so how). And is the
default shell of the user submitting the job tcsh (like the shebang in the
script)
Chris,
I use that -x switch all the time in other situations. Don't know why I
didn't think of using it in this one. Thanks for reminding me of that.
Prentice
On 3/22/19 1:18 PM, Christopher Samuel wrote:
On 3/21/19 3:43 PM, Prentice Bisbal wrote:
#!/bin/tcsh
Old school script debugging
Thomas,
The GUI app writes the script to the file slurm_script.sh in the cwd. I
did exactly what you suggested as my first step in debugging check the
Command= value from the output of 'scontrol show job' to see what script
was actually submitted, and it was the slurm_script.sh in the cwd.
On 3/21/19 3:43 PM, Prentice Bisbal wrote:
#!/bin/tcsh
Old school script debugging trick - make that line:
#!/bin/tcsh -x
and then you'll see everything the script is doing.
All the best,
Chris
--
Chris Samuel : http://www.csamuel.org/ : Berkeley, CA, USA
On 3/22/19 12:40 PM, Reuti wrote:
Am 22.03.2019 um 16:20 schrieb Prentice Bisbal :
On 3/21/19 6:56 PM, Reuti wrote:
Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
Slurm-users,
My users here have developed a GUI application which serves as a GUI interface
to various physics codes they use.
Assuming the GUI produced script is as you indicated (I am not sure where
you got the script you showed, but if it is not the actual script used by a
job it might be worthwhile to examine the Command= file from scontrol show
job to verify), then the only thing that should be different from a GUI
su
> Am 22.03.2019 um 16:20 schrieb Prentice Bisbal :
>
> On 3/21/19 6:56 PM, Reuti wrote:
>> Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
>>
>>> Slurm-users,
>>>
>>> My users here have developed a GUI application which serves as a GUI
>>> interface to various physics codes they use. From thi
On 3/21/19 6:56 PM, Reuti wrote:
Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
Slurm-users,
My users here have developed a GUI application which serves as a GUI interface
to various physics codes they use. From this GUI, they can submit jobs to
Slurm. On Tuesday, we upgraded Slurm from 18.
Am 21.03.2019 um 23:43 schrieb Prentice Bisbal:
> Slurm-users,
>
> My users here have developed a GUI application which serves as a GUI
> interface to various physics codes they use. From this GUI, they can submit
> jobs to Slurm. On Tuesday, we upgraded Slurm from 18.08.5-2 to 18.08.6-2,and
Slurm-users,
My users here have developed a GUI application which serves as a GUI
interface to various physics codes they use. From this GUI, they can
submit jobs to Slurm. On Tuesday, we upgraded Slurm from 18.08.5-2 to
18.08.6-2,and a user has reported a problem when submitting Slurm jobs
t
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