Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak

2020-01-28 Thread Alex Zelter
Hi David, Thanks very much for looking at this so quickly. I checked out the latest build, TPP v5.2.1-dev Flammagenitus, Build 202001280920-8004, and that has resolved the issue. Cheers, Alex On Tuesday, January 28, 2020 at 12:29:05 PM UTC-8, David Shteynberg wrote: > > Hi Alex, > > Thanks for s

Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak

2020-01-28 Thread 'David Shteynberg' via spctools-discuss
Hi Alex, Thanks for sharing your file. I have confirmed that the latest version of the code (SVN revision 8004) has corrected this problem. Please update your TPP software to latest SVN revision (or official release.) Cheers, David On Tue, Jan 28, 2020 at 8:57 AM Alex Zelter wrote: > I'm run

Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak

2020-01-28 Thread 'David Shteynberg' via spctools-discuss
Hi Alex, It looks like you are running an unofficial version of the code that obviously has a few issues with this data and has aged by this point. If you can share your input data I can try the latest version of the code and see if that works or provide a solution in the near future? Cheers, -D

[spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak

2020-01-28 Thread Alex Zelter
I'm running into the following error when trying to use xinteract to process Kojak 2.0 results. The command I'm running is: /usr/local/tpp/bin/xinteract -Ninteract.pep.xml -p0 -l1 -eT -D/path/to/database.fasta -PPM -OAPdp -drandom_ -ip ./kojak-output.pep.xml INFO: Processing xl MixtureModel ...