Jimmy,
Thanks for that info. Sounds great. I'll proceed based on the knowledge
that'll be available.
Cheers,
DT
On Monday, April 1, 2013 4:43:40 PM UTC-5, Jimmy Eng wrote:
>
> Dave,
>
> Mike Hoopmann implemented a nice fix for searches using small bins. The
> sources current in Comet SourceF
Dave,
Mike Hoopmann implemented a nice fix for searches using small bins. The
sources current in Comet SourceForge trunk should be fully functional. One
new parameter entry is titled "use_sparse_matrix" (see Comet version
2013.01 params in link below) which controls whether or not the sparse
mat
Hi Philip,
Sorry to drag up an old thread, but I wondered if you had info about the
effects on results of limiting Comet memory usage by using a large bin, vs
using the 64-bit binary and small bin?
We are primarily working with QExactive data here. I was thinking of adding
Comet to our pipeli
I just emailed you off-list regarding the x64 binary.
On Thu, Jan 17, 2013 at 4:56 AM, Philip Brownridge <
philip.brownri...@gmail.com> wrote:
> Hello Jimmy, thank you very much for your quick reply! You're completely
> correct about the fragment bin value, when I ran Comet (thank you for name
>
Hello Jimmy, thank you very much for your quick reply! You're completely
correct about the fragment bin value, when I ran Comet (thank you for name
guidance) using the LTQ settings it worked fine! When I ran it on the high
resolution settings with task mamager on, I saw that I was getting the
c
Philip,
I'm guessing you're specifying a small "fragment_bin_tol" value for the
high-res ms/ms spectra. This causes Comet (not all capitalized) to use a
ton of memory and you're just running out of memory.
On the following UWPR SEQUEST page, there's a table correlating a set of
fragment_bin_tol
Hello all, please can I apologise if I have posted this in the wrong group,
but I can't find a COMET group and there are other COMET postings here so I
hope someone can help me! I'm trying to use some QExactive data with Comet
and I keep getting either a calloc error message or a message saying
