Hi everyone,
I am trying to trick TPP into letting me use it to view annotated spectra
from a currently unsupported search algorithm, MS-GFDB (which is an
excellent tool by the way). I was able to use a script I found online,
msgfdb2pepxml.py, to make the pepxml file and it does load using
Jessie,
The spectral viewer tries to read the spectra in .mzXML, .mzML, .dta
or collection of .dta compressed into a .tgz archive. So it doesn't
assume your data is in a .tgz file, that was just one of the attempts
it went through to try and access the underlying spectral data to
display and
Thanks for your fast and detailed reply, Jimmy!
A combination of your suggestions solved the problem. First I moved the
file A1A2merged.mzXML into the correct directory specified in the pepXML
file. Second, I needed to change the following line in the .pepXML file
from:
msms_run_summary
