Re: [spctools-discuss] mzXML files - zlib codec error with X!Tandem

2013-06-06 Thread Avinash
Hi Mike, Thanks for the pointer. Reconverting the files to mzXML fixed the problem for now. Yes.. I was building from the GPM source. I was told to add files for the K-score plugin before compiling. But didn't realize there were other difference too. Will look into building from the TPP versio

Re: [spctools-discuss] mzXML files - zlib codec error with X!Tandem

2013-06-06 Thread Michael Hoopmann
Hi Avinash, Are you building from the TPP source or from the GPM source? The GPM support for the mzXML format is poorly (or hardly) implemented. It does not accept files that make use of some very basic features of the format. For the TPP version, we made several improvements to accept all mzX

[spctools-discuss] mzXML files - zlib codec error with X!Tandem

2013-06-06 Thread Avinash
Hi all, I have been trying to compile and run X!Tandem for searches on a linux machine. I am getting the following error when I try to search an mzXML file. " Loading spectra (mzXML).Non-standard CODEC used for mzXML peak data (CODEC type=zlib): file cannot be interpreted." Strangely, it runs