Hi Mike, Thanks for the pointer. Reconverting the files to mzXML fixed the problem for now.
Yes.. I was building from the GPM source. I was told to add files for the K-score plugin before compiling. But didn't realize there were other difference too. Will look into building from the TPP version now. thanks! On Thursday, June 6, 2013 2:17:17 PM UTC-4, Michael Hoopmann wrote: > > Hi Avinash, > Are you building from the TPP source or from the GPM source? The GPM > support for the mzXML format is poorly (or hardly) implemented. It does > not accept files that make use of some very basic features of the > format. For the TPP version, we made several improvements to accept all > mzXML files, plus many other standard formats. > > The quick workaround for you is to convert your data to mzXML again, but > disable compression (do not use the --zlib flag). The caveat to this is > you will eat up twice as much disk space. The long term solution would > be to use the TPP source when compiling. > > Cheers, > Mike > > On 6/6/2013 6:00 AM, Avinash wrote: > > Hi all, > > > > I have been trying to compile and run X!Tandem for searches on a linux > > machine. I am getting the following error when I try to search an > > mzXML file. > > > > " Loading spectra (mzXML).Non-standard CODEC used for mzXML peak data > > (CODEC type=zlib): file cannot be interpreted." > > > > Strangely, it runs fine on a few other mzXML files which were, to the > > best of my knowledge, created in the same msConvert run and so should > > be the same. I took a quick look at the mzXML files which did run and > > those that did not. I couldn't find any major differences.. but I > > wouldn't know for sure what to look for anyway. > > > > Any suggestions on what might be going wrong and what I should look for? > > > > thanks, > > > > Avinash > > > > > > > > -- > > You received this message because you are subscribed to the Google > > Groups "spctools-discuss" group. > > To unsubscribe from this group and stop receiving emails from it, send > > an email to spctools-discu...@googlegroups.com <javascript:>. > > To post to this group, send email to > > spctools...@googlegroups.com<javascript:>. > > > Visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > For more options, visit https://groups.google.com/groups/opt_out. > > > > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
