Hi Avinash,
Are you building from the TPP source or from the GPM source? The GPM
support for the mzXML format is poorly (or hardly) implemented. It does
not accept files that make use of some very basic features of the
format. For the TPP version, we made several improvements to accept all
mzXML files, plus many other standard formats.
The quick workaround for you is to convert your data to mzXML again, but
disable compression (do not use the --zlib flag). The caveat to this is
you will eat up twice as much disk space. The long term solution would
be to use the TPP source when compiling.
Cheers,
Mike
On 6/6/2013 6:00 AM, Avinash wrote:
Hi all,
I have been trying to compile and run X!Tandem for searches on a linux
machine. I am getting the following error when I try to search an
mzXML file.
" Loading spectra (mzXML).Non-standard CODEC used for mzXML peak data
(CODEC type=zlib): file cannot be interpreted."
Strangely, it runs fine on a few other mzXML files which were, to the
best of my knowledge, created in the same msConvert run and so should
be the same. I took a quick look at the mzXML files which did run and
those that did not. I couldn't find any major differences.. but I
wouldn't know for sure what to look for anyway.
Any suggestions on what might be going wrong and what I should look for?
thanks,
Avinash
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