Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 05:36:19PM -0400, Jeff Squyres wrote: > On Mar 31, 2009, at 5:25 PM, Kevin McManus wrote: > > >--- MCA component mtl:psm (m4 configuration macro) > >checking for MCA component mtl:psm compile mode... static > >checking --with-psm value... simple ok (unspecified) > >checking

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
On Mar 31, 2009, at 5:25 PM, Kevin McManus wrote: --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... static checking --with-psm value... simple ok (unspecified) checking --with-psm-libdir value... sanity check ok (/usr/lib64) checking psm.h usab

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 04:59:00PM -0400, Jeff Squyres wrote: > My goal in having you try that statement in a standalone shell script > wasn't the success or failure of the uname command -- but rather to > figure out if something in that statement itself was causing the > syntax error. > > A

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
My goal in having you try that statement in a standalone shell script wasn't the success or failure of the uname command -- but rather to figure out if something in that statement itself was causing the syntax error. Apparently it is not. There's an errant character elsewhere that is cau

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 10:11:17PM +0200, Bogdan Costescu wrote: > On Tue, 31 Mar 2009, Bogdan Costescu wrote: > > >'uname -X' is valid on Solaris, but not on Linux. > > Not good to reply to oneself, but I've looked at the archives and > realized that 'uname -X' comes from a message of the OP. M

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 09:57:02PM +0200, Bogdan Costescu wrote: > On Tue, 31 Mar 2009, Jeff Squyres wrote: > > >UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` > > Not sure what you want to achieve here... 'uname -X' is valid on > Solaris, but not on Linux. The OP has indicated alrea

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Bogdan Costescu
On Tue, 31 Mar 2009, Bogdan Costescu wrote: 'uname -X' is valid on Solaris, but not on Linux. Not good to reply to oneself, but I've looked at the archives and realized that 'uname -X' comes from a message of the OP. My guess is that the same source directory was used to build for Solaris p

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Bogdan Costescu
On Tue, 31 Mar 2009, Jeff Squyres wrote: UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` Not sure what you want to achieve here... 'uname -X' is valid on Solaris, but not on Linux. The OP has indicated already that he is running this on Linux (SLES) so the above line is supposed t

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 01:37:22PM -0400, Jeff Squyres wrote: > On Mar 31, 2009, at 1:31 PM, Terry Dontje wrote: > > >Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e > >'s/.*= //')` in your shell without error? > > > > Better would be to put this small script by itself: > > #!

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 01:31:12PM -0400, Terry Dontje wrote: > I was talking with Jeff Squyres about your issue and he thinks the > config.guess issue needs to be resolved first, even though your > specification of x86_64 seems to get you by. > > So, do you still see the unexpected "(" if you t

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
On Mar 31, 2009, at 1:31 PM, Terry Dontje wrote: Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` in your shell without error? Better would be to put this small script by itself: #! /bin/sh UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` echo got $UN

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Terry Dontje
ype; you must specify one Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` in your shell without error? --td Terry Dontje wrote: Date: Mon, 30 Mar 2009 19:05:25 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudio c

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> Grasping at straws, I suggest putting /bin before /usr/bin in your > PATH (we may be using different versions of grep, gawk, etc.). Try > removing Absoft, Intel, and Pathscale compilers from your environment. I have set .bashrc to give me ~> echo $PATH /bin:/sbin:/usr/bin:/usr/sbin/:/usr/local/

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 03:15:18PM -0400, Terry Dontje wrote: > > > > > >->ls -l /bin/sh > >lrwxrwxrwx 1 root root 4 2008-04-02 02:13 /bin/sh -> bash > > > I am using tcsh it may take me a while to set up bash for myself. I too run tcsh as a login shell but the scripts are all shebanged to run

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 02:01:13PM -0500, Ethan Mallove wrote: > On Mon, Mar/30/2009 07:26:28PM, Kevin McManus wrote: > > > > you run 'uname -X'? > > > > > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. > > > > which is what I would expect > > do you also need to supply a pla

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
Date: Mon, 30 Mar 2009 19:05:25 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudioconfigure problem To: Open MPI Users Message-ID: <20090330180524.gt13...@gre.ac.uk> Content-Type: text/plain; charset=us-ascii > > I will try to r

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 07:26:28PM, Kevin McManus wrote: > > > you run 'uname -X'? > > > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. > > which is what I would expect > do you also need to supply a platform identity/type as an argument? > > > Post your config.log file. > > at

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> > you run 'uname -X'? > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. which is what I would expect do you also need to supply a platform identity/type as an argument? > Post your config.log file. attached to previous relpy let me know if you need it re-sending k.mcma.

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Kevin McManus
> cat /etc/*release ->cat /etc/*release LSB_VERSION="core-2.0-noarch:core-3.0-noarch:core-2.0-x86_64:core-3.0-x86_64" SUSE LINUX 10.1 (X86-64) VERSION = 10.1 k.mcma...@gre.ac.uk - http://staffweb.cms.gre.ac.uk/~k.mcmanus -- Dr Kevin M

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 07:05:25PM, Kevin McManus wrote: > > > > I will try to reproduce the problem. > > > > I am not able to reproduce this with openmpi-1.3.2a1r20880.tar.gz. > > > > $ uname -a > > Linux ... 2.6.16.46-0.12-smp #1 SMP Thu May 17 14:00:09 UTC 2007 x86_64 > > x86_64 x86_64 GNU/L

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> > I will try to reproduce the problem. > > I am not able to reproduce this with openmpi-1.3.2a1r20880.tar.gz. > > $ uname -a > Linux ... 2.6.16.46-0.12-smp #1 SMP Thu May 17 14:00:09 UTC 2007 x86_64 > x86_64 x86_64 GNU/Linux > $ cc -V > cc: Sun C 5.9 Linux_i386 Patch 124871-01 2007/07

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
not Sun Studio specific. In order to answer my first question can you include the output of: cat /etc/*release thanks, --td thanks, --td Date: Mon, 30 Mar 2009 16:02:11 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudio configure problem To

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
specific. thanks, --td Date: Mon, 30 Mar 2009 16:02:11 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudioconfigure problem To: Open MPI Users Message-ID: <20090330150211.go13...@gre.ac.uk> Content-Type: text/plain; charset=us-ascii On Mon,

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 04:24:54PM +0100, John Hearns wrote: > 2009/3/30 Kevin McManus : > > > > > I can find psm libs at... > > > > /usr/lib/libpsm_infinipath.so.1.0 > > /usr/lib/libpsm_infinipath.so.1 > > /usr/lib64/libpsm_infinipath.so.1.0 > > /usr/lib64/libpsm_infinipath.so.1 > > > On x86_64

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 11:23:33AM -0400, Iain Bason wrote: > > On Mar 30, 2009, at 11:02 AM, Kevin McManus wrote: > > >configure: error: unrecognized option: --diable-mpi-threads > > Typo. That should be --disable-mpi-threads. oops silly me :-) argument accepted but still get MCA bucket prob

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 09:04:26AM, Ethan Mallove wrote: > On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > > > Hi All, > > > > As a complete beginner (to OpenMPI) I am attempting to build on > > a Linux opteron infiniband platform using SunStudio compilers. > > > > My build script looks lik

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread John Hearns
2009/3/30 Kevin McManus : > > > I can find psm libs at... > > /usr/lib/libpsm_infinipath.so.1.0 > /usr/lib/libpsm_infinipath.so.1 > /usr/lib64/libpsm_infinipath.so.1.0 > /usr/lib64/libpsm_infinipath.so.1 On x86_64 type systems /usr/lib64 are the 64 bit libraries, /usr/lib are the 32 bit ones

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Iain Bason
On Mar 30, 2009, at 11:02 AM, Kevin McManus wrote: configure: error: unrecognized option: --diable-mpi-threads Typo. That should be --disable-mpi-threads. Iain

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 09:04:26AM -0500, Ethan Mallove wrote: > On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > > > Hi All, > > > > As a complete beginner (to OpenMPI) I am attempting to build on > > a Linux opteron infiniband platform using SunStudio compilers. > > > > My build script

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > Hi All, > > As a complete beginner (to OpenMPI) I am attempting to build on > a Linux opteron infiniband platform using SunStudio compilers. > > My build script looks like... > > #!/bin/sh > > ../configure x86_64 \ > CC=cc CXX=CC

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 08:31:40AM -0400, Terry Dontje wrote: > Sorry for the delay in response, I was out of the office late last week. > > Can you tell me what version of Open MPI you are trying to build (1.2 or > 1.3 branch)? Are you using the tarball on the Open MPI site or code > downloade

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Terry Dontje
Sorry for the delay in response, I was out of the office late last week. Can you tell me what version of Open MPI you are trying to build (1.2 or 1.3 branch)? Are you using the tarball on the Open MPI site or code downloaded from the svn repository? Can you tell me which distribution and vers