Re: [OMPI users] Open MPI program cannot complete

2010-10-27 Thread Jack Bryan
thanksI got :-bash-3.2$ padb -Ormgr=pbs -Q 48516.cystorm2$VAR1 = {};Job 48516.cluster is not activeActually, the job is running. Any help is appreciated. thanksJinxu DingOct. 27 2010 > Subject: Re: [OMPI users] Open MPI program cannot complete > From: ash...@pittman.co.uk > Date: Tu

Re: [OMPI users] Open MPI program cannot complete

2010-10-26 Thread Jack Bryan
thanks I got : -bash-3.2$ padb -Ormgr=pbs -Q 48516.cystorm2$VAR1 = {};Job 48516.cluster is not active Actually, the job is running. Any help is appreciated. thanksJinxu Ding Oct. 26 2010 > Subject: Re: [OMPI users] Open MPI program cannot complete > From: ash...@pittman.co.uk > Date

Re: [OMPI users] Open MPI program cannot complete

2010-10-26 Thread Jack Bryan
thanksBut, I cannot see the attachment in the email. Would you please send me again ? and also copy to another my email:tomviewisu@yahoo.comthanksOct. 25 2010 From: dtustud...@hotmail.com To: ash...@pittman.co.uk Subject: RE: [OMPI users] Open MPI program cannot complete List-Post: users

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
-3.2-beta1'make[1]: Nothing to be done for `installcheck-am'.make[1]: Leaving directory `/mypath/padb32/padb-3.2-beta1'-- Are there something wrong with what I have done ? Any help is appreciated. thanks Jack Oct. 25 2010 > From: ash...@pittman

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread David Zhang
can you install MPI on your local machine? As someone said earlier, you don't need a cluster to run MPI. You can run MPI with multiple processes on a single computer. On Mon, Oct 25, 2010 at 12:40 PM, Ashley Pittman wrote: > > On 25 Oct 2010, at 20:18, Jack Bryan wrote: >

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Ashley Pittman
On 25 Oct 2010, at 20:18, Jack Bryan wrote: > Thanks > I have downloaded > http://padb.googlecode.com/files/padb-3.0.tgz > > and compile it. > > But, no user manual, I can not use it by padb -aQ. The -a flag is a shortcut to all jobs, if you are providing a jobid (which is normally numeric)

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
it ? thanks > From: ash...@pittman.co.uk > Date: Mon, 25 Oct 2010 18:08:32 +0100 > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > > On 25 Oct 2010, at 17:26, Jack Bryan wrote: > > > Thanks, the problem is still there. > >

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
thanks But, the code is too long. Jack Oct. 25 2010 > Date: Mon, 25 Oct 2010 14:08:54 -0400 > From: g...@ldeo.columbia.edu > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > Your job may be queued, not executing, because there are no >

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Gus Correa
. Any help is appreciated. Thanks Jack Oct. 25 2010 From: jsquy...@cisco.com Date: Mon, 25 Oct 2010 13:39:30 -0400 To: us...@open-mpi.org Subject: Re: [OMPI users] Open MPI program cannot complete Can you use the interactive mode of PBS to get 5 cores on 1 node? IIRC, "qs

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jeff Squyres
show up. > > No shell prompt appear, the command line is hang there , no response. > > Any help is appreciated. > > Thanks > > Jack > > Oct. 25 2010 > > > From: jsquy...@cisco.com > > Date: Mon, 25 Oct 2010 13:39:30 -0400 > > To: us...@

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
rom: jsquy...@cisco.com > Date: Mon, 25 Oct 2010 13:39:30 -0400 > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > Can you use the interactive mode of PBS to get 5 cores on 1 node? IIRC, > "qsub -I ..." ? > > Then you get a s

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jed Brown
On Mon, Oct 25, 2010 at 19:35, Jack Bryan wrote: > I have to use #PBS to submit any jobs in my cluster. > I cannot use command line to hang a job on my cluster. > You don't need a cluster to run MPI jobs, can you run the job on whatever you development machine is? Does

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jeff Squyres
Oct. 25 2010 > > Date: Mon, 25 Oct 2010 19:24:35 +0200 > From: j...@59a2.org > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > On Mon, Oct 25, 2010 at 19:07, Jack Bryan <dtustud...@hotmail.com> wrote: > I need to use #PBS p

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jed Brown
On Mon, Oct 25, 2010 at 19:07, Jack Bryan wrote: > I need to use #PBS parallel job script to submit a job on MPI cluster. > Is it not possible to reproduce locally? Most clusters have a way to submit an interactive job (which would let you start this thing and then

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Ashley Pittman
On 25 Oct 2010, at 17:26, Jack Bryan wrote: > Thanks, the problem is still there. > > I used: > > Only process 0 returns. Other processes are still struck in > MPI_Finalize(). > > Any help is appreciated. You can use the command "padb -aQ" to show you the message queues for your

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
the ZOMBIE_PID ? thanks Any help is appreciated. Jack Oct. 25 2010 List-Post: users@lists.open-mpi.org Date: Mon, 25 Oct 2010 19:01:38 +0200 From: j...@59a2.org To: us...@open-mpi.org Subject: Re: [OMPI users] Open MPI program cannot complete On Mon, Oct 25, 2010 at 18:26, Jack Bryan <dtus

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
n\n" << endl ;return 0 ; Only process 0 returns. Other processes are still struck inMPI_Finalize(). Any help is appreciated. JACK Oct. 25 2010 From: solarbik...@gmail.com List-Post: users@lists.open-mpi.org Date: Mon, 25 Oct 2010 08:27:19 -0700 To: us...@open-mpi.

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread David Zhang
ve > been checked and finished. right ? > > What may be the possible reasons for that stuck ? > > Any help is appreciated. > > Jack > > Oct. 25 2010 > * > * > -- > Date: Mon, 25 Oct 2010 05:32:44 -0400 > From: terry.don...@orac

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
t may be the possible reasons for that stuck ? Any help is appreciated. Jack Oct. 25 2010 List-Post: users@lists.open-mpi.org Date: Mon, 25 Oct 2010 05:32:44 -0400 From: terry.don...@oracle.com To: us...@open-mpi.org Subject: Re: [OMPI users] Open MPI program cannot complete M

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Terry Dontje
ct. 25 2010 -------- From: solarbik...@gmail.com Date: Sun, 24 Oct 2010 19:47:54 -0700 To: us...@open-mpi.org Subject: Re: [OMPI users] Open MPI program cannot complete how do you know all process call mpi_finalize? did you have all

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
he process has reached the point just before MPI_Finalize(), why they are hanged there ? Are there other better ways to check this ? Any help is appreciated. thanksJackOct. 25 2010 From: solarbik...@gmail.com List-Post: users@lists.open-mpi.org Date: Sun, 24 Oct 2010 19:47:54 -0700 To: us...@open-mpi.o

Re: [OMPI users] Open MPI program cannot complete

2010-10-25 Thread Jack Bryan
r better ways to check this ? Any help is appreciated. thanks Jack Oct. 25 2010 From: solarbik...@gmail.com List-Post: users@lists.open-mpi.org Date: Sun, 24 Oct 2010 19:47:54 -0700 To: us...@open-mpi.org Subject: Re: [OMPI users] Open MPI program cannot complete how do you know all process c

Re: [OMPI users] Open MPI program cannot complete

2010-10-24 Thread Jack Bryan
Thanks, But, my code is too long to be posted. What are the common reasons of this kind of problems ? Any help is appreciated. Jack Oct. 24 2010 > From: g...@ldeo.columbia.edu > Date: Sun, 24 Oct 2010 18:09:52 -0400 > To: us...@open-mpi.org > Subject: Re: [OMPI users] Open MPI pr

Re: [OMPI users] Open MPI program cannot complete

2010-10-24 Thread Gustavo Correa
ne before a process call MPI_Finalize() and returns. > > Any help is appreciated. > > thanks > > Jack > > Oct. 24 2010 > > > From: g...@ldeo.columbia.edu > > Date: Sun, 24 Oct 2010 17:31:11 -0400 > > To: us...@open-mpi.org > > Subject: Re: [O

Re: [OMPI users] Open MPI program cannot complete

2010-10-24 Thread Jack Bryan
s...@open-mpi.org > Subject: Re: [OMPI users] Open MPI program cannot complete > > Hi Jack > > It may depend on "do some things". > Does it involve MPI communication? > > Also, why not put MPI_Finalize();return 0 outside the ifs? > > Gus Correa > > O

Re: [OMPI users] Open MPI program cannot complete

2010-10-24 Thread Gustavo Correa
Hi Jack It may depend on "do some things". Does it involve MPI communication? Also, why not put MPI_Finalize();return 0 outside the ifs? Gus Correa On Oct 24, 2010, at 2:23 PM, Jack Bryan wrote: > Hi > > I got a problem of open MPI. > > My program has 5 processes. > > All of them can

[OMPI users] Open MPI program cannot complete

2010-10-24 Thread Jack Bryan
Hi I got a problem of open MPI. My program has 5 processes. All of them can run MPI_Finalize() and return 0. But, the whole program cannot be completed. In the MPI cluster job queue, it is strill in running status. If I use 1 process to run it, no problem. Why ? My program: int main (int