I'm lost. You said "recently I used the msconvert to convert some QQQ wiff files to mzML format". Are we talking about ABI WIFF or Thermo RAW?
-Matt Brian Pratt wrote: > You probably mean mzXML rather than mzML? > > On Fri, Oct 2, 2009 at 3:55 PM, Zhi Sun <z...@systemsbiology.org > <mailto:z...@systemsbiology.org>> wrote: > > > I just mean the mzML format itself. I used ReAdw to convert RAW > file to mzML > format. > > Thanks, > Zhi > > > -----Original Message----- > From: spctools-discuss@googlegroups.com > <mailto:spctools-discuss@googlegroups.com> > [mailto:spctools-discuss@googlegroups.com > <mailto:spctools-discuss@googlegroups.com>] On Behalf Of Matthew > Chambers > Sent: Friday, October 02, 2009 3:49 PM > To: spctools-discuss@googlegroups.com > <mailto:spctools-discuss@googlegroups.com> > Subject: [spctools-discuss] Re: msconvert generated mzML file > > > Hi Zhi, > > You say it worked fine with ReAdW; do you mean mzWiff? If so, what > conversion settings did you use (for both msconvert and mzwiff)? > > -Matt > > > Zhi Sun wrote: > > Hi All, > > > > Recently I used the msconvert to convert some QQQ wiff files to mzML > format, > > and did X!tandem search using those mzML files. I ran into a > problem. > > X!tandem took really long time (2 or more hours) for loading the > spectra, > > and them after it finally finished loading, it just reported > "Loaded, No > > input spectra met the acceptance criteria." The X!tandem runs > fine on > other > > mzML file. I tested on one mzML which was generated by ReAdw before. > > > > When doing the conversion, I used default options for msconvert. > Does > anyone > > of you know what could be the reason for this? If necessary, I > could send > > the wiff file and also the mzML file. > > > > Thanks, > > Zhi > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
