hi there,
I began to use TPP with GUI. It was a perfect experience. But
high throughput data sets requires me to process the data more
efficiently. I used to avoid mouse clicking using DOS or perl scripts.
Here I'm asking, can anybody provide more DOS commands or perl
scripts to process data files using TPP, such as the commands for
convert raw to mzXML, run PeptideProphet, ProteinProphet? (I can only
find one in the wiki tutorial).
Thanks a lot!
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