Tian Nan Ni Hao! Actually the commands are shown on the GUI result page. Here are some commonly used commands:
For PeptideProphet xinteract -Ninteract.pep.xml -p0.05 -l7 -OdAmp -I2 -I3 -I4 -I5 -I6 - I7 -dDECOY_ abc.pep.xml efg.pep.xml ... type xinteract only for help and note on the parameters For ProteinProphet ProteinProphet interact.pep.xml interact.prot.xml EXCLUDE_ZEROS protxml2html.pl -file <location of xml interact.prot.xml > Melody On Oct 22, 10:17 am, tiannan <tiannan....@gmail.com> wrote: > hi there, > > I began to use TPP with GUI. It was a perfect experience. But > high throughput data sets requires me to process the data more > efficiently. I used to avoid mouse clicking using DOS or perl scripts. > > Here I'm asking, can anybody provide more DOS commands or perl > scripts to process data files using TPP, such as the commands for > convert raw to mzXML, run PeptideProphet, ProteinProphet? (I can only > find one in the wiki tutorial). > > Thanks a lot! --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
