After converting SQT file to pep.xml file, I ran the following command: xinteract -Ninteract.pep.xml -p0.05 -l7 -O test5.pep.xml
Then, it crashed in some step. Here is the error message. I spent days on it but the pipeline TPP still fails. Could anyone give me some help? ################################################################ xinteract (TPP v4.4 VUVUZELA rev 1, Build 201106201323 (linux)) running: "/home/stow/swtree/stow/TPP-4.4.1/bin/InteractParser 'interact.pep.xml' 'test5.pep.xml' -L'7'" file 1: test5.pep.xml processed altogether 41651 results results written to file /home/kinfai/test5/interact.pep.shtml command completed in 44 sec running: "/home/stow/swtree/stow/TPP-4.4.1/bin/PeptideProphetParser 'interact.pep.xml' MINPROB=0.05" )(mspire: ms-sequest not recognizedspire: ms-sequest command "/home/stow/swtree/stow/TPP-4.4.1/bin/PeptideProphetParser 'interact.pep.xml' MINPROB=0.05" exited with non-zero exit code: 256 QUIT - the job is incomplete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
