spctools-discuss

Messages by Date

2016/07/10 [spctools-discuss] LIBRA Quantification-Fold change value calculation Vijay Kumar
2016/07/10 [spctools-discuss] Inclusion of Decoy sequences in Target Database sequences Vijay Kumar
2016/07/07 [spctools-discuss] Mayu fails with dir argument to -A or -B James Johnson
2016/07/07 [spctools-discuss] MyriMatch and xinteract Craig Mageean
2016/07/06 [spctools-discuss] SpectraST RAM issue when generating decoy library Pieter-Jan Volders
2016/07/05 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2016/07/05 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/07/01 [spctools-discuss] mzML in TPP 4.8/SpectraST 5.0 Sten Heinze
2016/06/30 Re: [spctools-discuss] Re: Peptide Prophet of MSGF+ results gives too many IDs? David Shteynberg
2016/06/30 Re: [spctools-discuss] Re: Peptide Prophet of MSGF+ results gives too many IDs? Jesse
2016/06/28 Re: [spctools-discuss] Re: Peptide Prophet of MSGF+ results gives too many IDs? Jesse
2016/06/27 Re: [spctools-discuss] Re: Peptide Prophet of MSGF+ results gives too many IDs? David Shteynberg
2016/06/27 [spctools-discuss] Re: Peptide Prophet of MSGF+ results gives too many IDs? Jesse
2016/06/25 Re: [spctools-discuss] msconvert failed to convert Fusion and Lumos raw file to mgf file cheng chang
2016/06/23 Re: [spctools-discuss] msconvert failed to convert Fusion and Lumos raw file to mgf file cheng chang
2016/06/23 [spctools-discuss] msconvert failed to convert Fusion and Lumos raw file to mgf file cheng chang
2016/06/22 Re: [spctools-discuss] Difference between mxML and mzXML format Jimmy Eng
2016/06/21 Re: [spctools-discuss] Difference between mxML and mzXML format Vijay Kumar
2016/06/21 Re: [spctools-discuss] using PTMProphet for more then 5 PTM? David Shteynberg
2016/06/21 Re: [spctools-discuss] Tutorial for Decoy peptide and protein validation David Shteynberg
2016/06/21 Re: [spctools-discuss] Difference between mxML and mzXML format Jimmy Eng
2016/06/21 Re: [spctools-discuss] Tutorial for Decoy peptide and protein validation Vijay Kumar
2016/06/18 Re: [spctools-discuss] Tutorial for Decoy peptide and protein validation 钟传奇
2016/06/18 [spctools-discuss] Tutorial for Decoy peptide and protein validation Vijay Kumar
2016/06/18 [spctools-discuss] Decoy database error in peptideprophat Vijay Kumar
2016/06/18 [spctools-discuss] PeptideProphet - No of read spectra Vijay Kumar
2016/06/18 [spctools-discuss] Pep3D image problem for mzXML format data Vijay Kumar
2016/06/18 [spctools-discuss] Difference between mxML and mzXML format Vijay Kumar
2016/06/18 [spctools-discuss] Re: Libra quantification result interpretation Vijay Kumar
2016/06/18 [spctools-discuss] selection of Force the fitting of the mixture model Vijay Kumar
2016/06/16 Re: [spctools-discuss] Libra quantification result interpretation Luis Mendoza
2016/06/16 [spctools-discuss] Re: Error in TPP v4.8.0 Makefile.incl on Debian Sten Heinze
2016/06/15 [spctools-discuss] Error in TPP v4.8.0 Makefile.incl on Debian Sten Heinze
2016/06/14 [spctools-discuss] Libra quantification result interpretation Vijay Kumar
2016/06/14 Re: [spctools-discuss] Comet database search error Vijay Kumar
2016/06/13 [spctools-discuss] plotspectrast not working mcqueen . p
2016/06/13 [spctools-discuss] plotspectrast not working. mcqueen . p
2016/06/13 Re: [spctools-discuss] Comet database search error Jimmy Eng
2016/06/12 Re: [spctools-discuss] Comet database search error 钟传奇
2016/06/12 Re: [spctools-discuss] Comet database search error Jimmy Eng
2016/06/12 [spctools-discuss] Comet database search error Vijay Kumar
2016/06/12 [spctools-discuss] TANDEM database search problem Vijay Kumar
2016/06/03 [spctools-discuss] TPP @ ASMS -- booth #805 + Monday Workshop Luis Mendoza
2016/05/01 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/05/01 [spctools-discuss] Build SpectraST library from MaxQuant output Constantin
2016/04/29 [spctools-discuss] Re: MassWolf error with MSe data kimnowbester
2016/04/29 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Matthias Mailänder
2016/04/29 [spctools-discuss] OpenChrom/ChemClipse converters Matthias Mailänder
2016/04/25 Re: [spctools-discuss] TPP 4.8.0 installation issues on Ubuntu 14.04 Craig Lawless
2016/04/21 Re: [spctools-discuss] qualscore mzXML parse error Damon May
2016/04/21 Re: [spctools-discuss] qualscore mzXML parse error David Shteynberg
2016/04/21 [spctools-discuss] qualscore mzXML parse error Damon May
2016/04/20 Re: [spctools-discuss] TPP 4.8.0 installation issues on Ubuntu 14.04 Joseph Slagel
2016/04/20 [spctools-discuss] TPP 4.8.0 installation issues on Ubuntu 14.04 Craig Lawless
2016/04/19 [spctools-discuss] Re: Tandem, MPI and output naming? Joshua Dunham
2016/04/18 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2016/04/15 [spctools-discuss] Tandem, MPI and output naming? Joshua Dunham
2016/04/15 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Constantin
2016/04/14 [spctools-discuss] label free quantitation of PTM sites zeyu sun
2016/04/14 [spctools-discuss] using PTMProphet for more then 5 PTM? zeyu sun
2016/04/13 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Joseph Slagel
2016/04/13 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Constantin
2016/04/13 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Joseph Slagel
2016/04/13 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2016/04/13 [spctools-discuss] Bugs or problems in idconverter --pepXML (MS-GF+ mzid to pepXML) Honglan Li
2016/04/13 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Constantin
2016/04/13 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/04/12 Re: [spctools-discuss] Problems with Makefile TPP v4.8.0 Joseph Slagel
2016/04/12 [spctools-discuss] Problems with Makefile TPP v4.8.0 Constantin
2016/04/11 Re: [spctools-discuss] Re: Problems building boost inside TPP dannjaron
2016/04/06 [spctools-discuss] Re: raw file too big? Emma Whittington
2016/04/06 [spctools-discuss] Re: raw file too big? Brendan MacLean
2016/04/05 [spctools-discuss] raw file too big? Emma Whittington
2016/04/04 Re: [spctools-discuss] iProphet mistakenly parses FPKM values when using a NextProt peff database (TPP v. 5.0) David Shteynberg
2016/04/04 Re: [spctools-discuss] iProphet mistakenly parses FPKM values when using a NextProt peff database (TPP v. 5.0) Jason
2016/04/04 Re: [spctools-discuss] iProphet mistakenly parses FPKM values when using a NextProt peff database (TPP v. 5.0) David Shteynberg
2016/04/04 [spctools-discuss] iProphet mistakenly parses FPKM values when using a NextProt peff database (TPP v. 5.0) Jason Winget
2016/04/01 Re: [spctools-discuss] condition.xml for TMT10plex Jimmy Eng
2016/04/01 [spctools-discuss] condition.xml for TMT10plex Shiliang Wang
2016/03/30 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/03/27 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/03/25 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2016/03/24 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/03/24 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2016/03/24 [spctools-discuss] Re: Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/03/24 [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Honglan Li
2016/03/23 [spctools-discuss] Slow searches with MS-GF+ under Windows Jason Winget
2016/03/22 Re: [spctools-discuss] Comet search performance issue bx2016uis
2016/03/22 Re: [spctools-discuss] Comet search performance issue Luis Mendoza
2016/03/22 Re: [spctools-discuss] Comet search performance issue Jimmy Eng
2016/03/22 Re: [spctools-discuss] Comet search performance issue Luis Mendoza
2016/03/22 Re: [spctools-discuss] Comet search performance issue Jimmy Eng
2016/03/22 Re: [spctools-discuss] Comet search performance issue bx2016uis
2016/03/22 Re: [spctools-discuss] Comet search performance issue Jimmy Eng
2016/03/22 Re: [spctools-discuss] Comet search performance issue bx2016uis
2016/03/22 Re: [spctools-discuss] Comet search performance issue bx2016uis
2016/03/22 Re: [spctools-discuss] Comet search performance issue Jimmy Eng
2016/03/22 Re: [spctools-discuss] Comet search performance issue bx2016uis
2016/03/21 RE: [spctools-discuss] Comet search performance issue Michael Hoopmann
2016/03/21 Re: [spctools-discuss] Comet search performance issue Brian Hampton
2016/03/21 Re: [spctools-discuss] Comet search performance issue Jimmy Eng
2016/03/21 [spctools-discuss] Comet search performance issue bx2016uis
2016/03/11 Re: [spctools-discuss] Protxml viewing error (not legacy) Server error 500 Bareword "endform" not allowed while "strict subs" in use Scott Walmsley
2016/03/11 Re: [spctools-discuss] Protxml viewing error (not legacy) Server error 500 Bareword "endform" not allowed while "strict subs" in use Luis Mendoza
2016/03/11 [spctools-discuss] Protxml viewing error (not legacy) Server error 500 Bareword "endform" not allowed while "strict subs" in use Scott Walmsley
2016/03/03 Re: [spctools-discuss] History of search_engine attributes in the pepXML schema David Shteynberg
2016/03/03 [spctools-discuss] History of search_engine attributes in the pepXML schema Mal Ross
2016/03/01 Re: [spctools-discuss] iProphet's NSP model David Shteynberg
2016/03/01 Re: [spctools-discuss] iProphet's NSP model John Damask
2016/03/01 Re: [spctools-discuss] Re: problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/03/01 Re: [spctools-discuss] Re: problem to open .pepXML file generated by TPP twa with xml viewer Joseph Slagel
2016/03/01 [spctools-discuss] Re: problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/02/26 [spctools-discuss] Re: problem to open .pepXML file generated by TPP twa with xml viewer jsla...@systemsbiology.org
2016/02/25 Re: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/02/25 Re: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/02/25 Re: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Luis M
2016/02/25 RE: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Eric Deutsch
2016/02/25 Re: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/02/25 RE: [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Eric Deutsch
2016/02/25 [spctools-discuss] problem to open .pepXML file generated by TPP twa with xml viewer Shiliang Wang
2016/02/21 [spctools-discuss] about X!tandem parameter c qin
2016/02/19 Re: [spctools-discuss] iProphet's NSP model David Shteynberg
2016/02/19 [spctools-discuss] iProphet's NSP model John Damask
2016/02/09 [spctools-discuss] Re: User-defined Modifications library construction and search using SpectraST Henry Lam
2016/02/09 [spctools-discuss] Re: User-defined Modifications library construction and search using SpectraST Henry Lam
2016/01/15 [spctools-discuss] Builds normally on CentOS, then fails at pwiz compilation step John Poirier
2016/01/03 Re: [spctools-discuss] Using MSFileReader API to Extract Information from Thermo RAW files Nathan Wamsley
2016/01/03 Re: [spctools-discuss] Using MSFileReader API to Extract Information from Thermo RAW files Nathan Wamsley
2015/12/29 [spctools-discuss] Installation problems on Ubuntu 14.04 Vivek S
2015/12/21 [spctools-discuss] Re: User-defined Modifications library construction and search using SpectraST Sarah P.
2015/12/18 [spctools-discuss] Re: error during mzML-conversion Pamella Malagrino
2015/12/17 [spctools-discuss] Xinteract Error - Problem in Retrieving XML data mukundan pillai
2015/12/15 [spctools-discuss] Re: User-defined Modifications library construction and search using SpectraST David Zhao
2015/12/15 [spctools-discuss] Re: User-defined Modifications library construction and search using SpectraST Sarah P.
2015/12/14 [spctools-discuss] Next TPP course in Seattle Feb 1-5 Eric Deutsch
2015/12/14 Re: [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? Brian Hampton
2015/12/14 Re: [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? David Zhao
2015/12/14 Re: [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? Jimmy Eng
2015/12/14 Re: [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? David Zhao
2015/12/14 [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? David Zhao
2015/12/14 Re: [spctools-discuss] Possible to run either msconvert or ReAdw on Linux using WINE? Joseph Slagel
2015/12/11 [spctools-discuss] bug report: empty lines added after manually changing XPRESS quants Florian
2015/12/11 [spctools-discuss] bug report: empty lines added after manually changing XPRESS quants Florian
2015/12/10 Re: [spctools-discuss] PeptideProphet and MSGF+ Usage (Mixture Model Failed) Ryan Lumpkin
2015/12/10 Re: [spctools-discuss] PeptideProphet and MSGF+ Usage (Mixture Model Failed) David Shteynberg
2015/12/09 [spctools-discuss] PeptideProphet and MSGF+ Usage (Mixture Model Failed) Ryan Lumpkin
2015/12/03 [spctools-discuss] Re: Protein Quantitation on Unique Peptides Only Florian
2015/11/27 [spctools-discuss] Re: "TPPish" taverna workflow with text mining/ Association analyses for peptides Florian
2015/11/27 [spctools-discuss] Re: Protein Quantitation on Unique Peptides Only Florian
2015/11/19 [spctools-discuss] Re: "TPPish" taverna workflow with text mining/ Association analyses for peptides Robert
2015/11/19 Re: [spctools-discuss] "TPPish" taverna workflow with text mining/ Association analyses for peptides Robert Winkler
2015/11/19 [spctools-discuss] Re: "TPPish" taverna workflow with text mining/ Association analyses for peptides magnus.palmb...@gmail.com
2015/11/18 RE: [spctools-discuss] "TPPish" taverna workflow with text mining/ Association analyses for peptides Eric Deutsch
2015/11/17 [spctools-discuss] "TPPish" taverna workflow with text mining/ Association analyses for peptides Robert Winkler
2015/11/17 [spctools-discuss] Protein Quantitation on Unique Peptides Only Florian
2015/11/06 [spctools-discuss] S-Nitrosylation Gabriela Venturini
2015/11/05 Re: [spctools-discuss] TPP 4.8 msconvert error Steffen Neumann
2015/10/28 Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
2015/10/28 Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
2015/10/28 [spctools-discuss] Re: Libra quantification zeyu sun
2015/10/28 Re: [spctools-discuss] SpectraST iRT normalization fail Ben Collins
2015/10/28 Re: [spctools-discuss] Problem of converting .dat to .pepxml echozhoujy
2015/10/27 RE: [spctools-discuss] Re: Thermo RAW metadata with msfilereader Eric Deutsch
2015/10/27 RE: [spctools-discuss] SpectraST iRT normalization fail Eric Deutsch
2015/10/23 [spctools-discuss] Re: Thermo RAW metadata with msfilereader François ALLAIN
2015/10/22 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/10/21 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/10/21 Re: [spctools-discuss] QualScore question HFaz
2015/10/21 Re: [spctools-discuss] QualScore question David Shteynberg
2015/10/21 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/10/21 [spctools-discuss] QualScore question HFaz
2015/10/21 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
2015/10/09 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
2015/10/09 [spctools-discuss] Biological Sample Fingerprinting by Spectral Archives (-s_FIN): looking to acquire bootstrap support for all dot products rather than just default dot_product_unique_sqrt, but can't find proper command seifst
2015/10/09 [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
2015/10/05 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/10/05 [spctools-discuss] Re: how many files can I merge in iprophet? Mohammad
2015/10/05 [spctools-discuss] I have a problem with TTP Mohammad
2015/10/05 [spctools-discuss] having problem with Appache Mohammad Goodarzi
2015/10/02 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/10/01 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/10/01 [spctools-discuss] Runtime error with ProteinProphet HFaz
2015/10/01 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/09/23 Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
2015/09/23 Re: [spctools-discuss] Sequest on TPP Jimmy Eng
2015/09/23 Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
2015/09/22 [spctools-discuss] Sequest on TPP HFaz
2015/09/22 Re: [spctools-discuss] Re: Proteome Discoverer's .msf to TPP input files (pepXML) HFaz
2015/09/20 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/09/20 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/09/20 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/09/18 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
2015/09/18 [spctools-discuss] Re: ProteinProphet limitations? Rachel
2015/09/18 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
2015/09/16 [spctools-discuss] Display of user defined modifications with spectraST Library Viewer not possible Sarah P.
2015/09/15 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg