Messages by Date
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2017/10/19
[spctools-discuss] Re: splib to mz(x)ml format
'Peter Cimermancic' via spctools-discuss
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2017/10/19
[spctools-discuss] Re: "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py
Hannes Roest
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2017/10/19
[spctools-discuss] Re: splib to mz(x)ml format
Hannes Roest
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2017/10/19
[spctools-discuss] generating spectral library excluding the negative PSMs from database search
Mrwhy2kill
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2017/10/19
Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool
Ulrich auf dem Keller
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2017/10/18
[spctools-discuss] "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py
Steven Shuken
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2017/10/18
[spctools-discuss] splib to mz(x)ml format
'Peter Cimermancic' via spctools-discuss
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2017/10/18
Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool
David Shteynberg
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2017/10/18
[spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool
Adam R
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Jimmy Eng
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
David Shteynberg
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2017/10/17
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/16
Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Jimmy Eng
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2017/10/16
[spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP
Steven Shuken
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2017/10/16
Re: [spctools-discuss] Protxml viewing error (not legacy) Server error 500 Bareword "endform" not allowed while "strict subs" in use
Steven Shuken
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2017/10/16
Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool
David Shteynberg
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2017/10/16
[spctools-discuss] Open heatmap (html) generated with compare proteins tool
Alexis Varin
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2017/10/16
[spctools-discuss] Opening heatmap (html) generated with compare proteins tool
Alexis Varin
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2017/10/05
Re: [spctools-discuss] PTM Prophet Command Failure
Adam R
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2017/10/02
Re: [spctools-discuss] PTM Prophet Command Failure
David Shteynberg
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2017/09/29
Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Adam R
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2017/09/29
Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Jimmy Eng
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2017/09/29
Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Adam R
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2017/09/29
Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Frédéric DELOLME
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2017/09/29
RE: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Eric Deutsch
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2017/09/29
[spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database
Adam R
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2017/09/28
Re: [spctools-discuss] PTM Prophet Command Failure
Adam R
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2017/09/26
Re: [spctools-discuss] PTM Prophet Command Failure
Adam R
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2017/09/26
Re: [spctools-discuss] PTM Prophet Command Failure
David Shteynberg
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2017/09/26
Re: [spctools-discuss] PTM Prophet Command Failure
Adam R
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2017/09/26
Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
Jimmy Eng
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2017/09/26
Re: [spctools-discuss] PTM Prophet Command Failure
David Shteynberg
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2017/09/26
Re: [spctools-discuss] PTM Prophet Command Failure
Adam R
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2017/09/25
[spctools-discuss] StPeter Command Failure TPP v.5.0.1
Adam R
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2017/09/25
Re: [spctools-discuss] PTM Prophet Command Failure
David Shteynberg
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2017/09/24
[spctools-discuss] PTM Prophet Command Failure
wicher89
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2017/09/22
Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
David Shteynberg
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2017/09/22
Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
Jimmy Eng
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2017/09/22
Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
Alejandro
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2017/09/06
Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
Jimmy Eng
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2017/09/06
[spctools-discuss] Re: Spectral library generation_consensus library split
Fabia Simona
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2017/09/05
[spctools-discuss] How many proteins to be reported after database searching?
lwhbackup
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2017/09/05
[spctools-discuss] Spectral library generation_consensus library split
Fabia Simona
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2017/09/05
[spctools-discuss] SpectraST Consensus library unsplit vs. split
Fabia Simona
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2017/08/31
[spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0)
Oded
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2017/08/20
[spctools-discuss] Tandem search engine is getting time out after every single run.
Syed Azmal Ali
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2017/08/11
Re: [spctools-discuss] TPP Search Software not working with generated mzML files
Connor Hoffmann
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2017/08/10
Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working
Alejandro
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2017/08/08
Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working
Jimmy Eng
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2017/08/08
[spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working
Jimmy Eng
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2017/08/08
Re: [spctools-discuss] TPP Search Software not working with generated mzML files
Connor Hoffmann
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2017/08/07
RE: [spctools-discuss] TPP Search Software not working with generated mzML files
Michael Hoopmann
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2017/08/06
[spctools-discuss] Error convert The GPM Human library (.hlf) to splib
Shadab Ahmad
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2017/08/02
[spctools-discuss] TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working
Alejandro
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2017/08/01
[spctools-discuss] Re: Proteome Discoverer 2.0 exported pep.xml does not work with PeptideProphet
Le Picard Marine
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2017/07/20
[spctools-discuss] How to include the iRT in the Library building mode SpecraST
Carolina
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2017/07/13
Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0
David Shteynberg
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2017/07/13
Re: [spctools-discuss] Re: StPeter documentation
Hampton, Brian
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2017/07/12
Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0
David Shteynberg
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2017/07/12
Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0
Jason Winget
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2017/07/12
Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0
David Shteynberg
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2017/07/12
Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0
Jason Winget
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2017/07/12
[spctools-discuss] Re: StPeter documentation
Jason Winget
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2017/06/28
Re: [spctools-discuss] PTMProphet -- command line
David Shteynberg
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2017/06/28
[spctools-discuss] PTMProphet -- command line
Victoria Lee
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2017/06/26
[spctools-discuss] Upcoming TPP courses
Eric Deutsch
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2017/06/26
RE: [spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra
Eric Deutsch
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2017/06/26
[spctools-discuss] win10:403 forbidden You don't have permission to access /tpp on this server.
ymstep2016
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2017/06/26
[spctools-discuss] Re: Peptide Prophet issues...help!
David Lauenstein
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2017/06/25
[spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra
Jianqiao Shen
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2017/06/20
[spctools-discuss] Installing TPP on Fedora 25. Failure to build libspareparts.a.
Govind Chandra
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2017/06/19
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/19
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/19
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
David Shteynberg
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2017/06/19
Re: [spctools-discuss] Analyze peptides- error
David Shteynberg
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2017/06/19
[spctools-discuss] Analyze peptides- error
Ada A
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2017/06/19
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/17
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
David Shteynberg
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2017/06/17
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/16
Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails
Luis Mendoza
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2017/06/16
Re: [spctools-discuss] TMT 8-plex Libra Condition File Parameters
Luis Mendoza
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2017/06/16
[spctools-discuss] StPeter documentation
Brian Hampton
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2017/06/16
[spctools-discuss] TMT 8-plex Libra Condition File Parameters
Linh Nguyen
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2017/06/15
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
David Shteynberg
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2017/06/14
Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails
Jimmy Eng
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2017/06/14
[spctools-discuss] for rhel based OSes (and tpp devel) - include glibc-static rpm as prerequisite to avoid: "cannot find -lpthread" & similar
lejeczek
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2017/06/13
[spctools-discuss] TPP 5.0 compilation on CentOS fails
Tomas
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2017/06/13
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
David Shteynberg
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2017/06/13
Re: [spctools-discuss] comet component compliation fails
Jimmy Eng
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2017/06/13
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/13
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/13
[spctools-discuss] release_5-0-0 build - archive_read_support_filter_lzop.c:434: undefined reference to `lzo1x_decompress_safe
lejeczek
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2017/06/13
[spctools-discuss] TPP release_5-0-0 compilation (boost) quirk
lejeczek
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2017/06/13
[spctools-discuss] comet component compliation fails
lejeczek
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2017/06/13
Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
David Shteynberg
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2017/06/12
[spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys
Carolina
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2017/06/02
[spctools-discuss] TPP @ ASMS -- booth #127 + Tuesday Workshop
Luis Mendoza
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2017/05/24
RE: [spctools-discuss] Re: Can't open spctools wiki
Eric Deutsch
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2017/05/24
[spctools-discuss] Re: Can't open spctools wiki
Jamie Walters
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2017/05/24
[spctools-discuss] Re: iProphet process
Yaarub Musa
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2017/05/23
Re: [spctools-discuss] Re: iProphet process
David Shteynberg
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2017/05/23
[spctools-discuss] Re: iProphet process
Yaarub Musa
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2017/05/22
Re: [spctools-discuss] Peptide Prophet issues...help!
Luis Mendoza
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2017/05/22
[spctools-discuss] Peptide Prophet issues...help!
Aeon K
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2017/05/22
Re: [spctools-discuss] Unable to kill command 6416! ()
Yaarub Musa
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2017/05/22
Re: [spctools-discuss] iProphet process
David Shteynberg
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2017/05/22
[spctools-discuss] iProphet process
Yaarub Musa
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2017/05/17
Re: [spctools-discuss] Unable to kill command 6416! ()
Luis Mendoza
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2017/05/17
[spctools-discuss] Unable to kill command 6416! ()
Yaarub Musa
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2017/05/14
Re: [spctools-discuss] Can't open spctools wiki
xu
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2017/05/10
RE: [spctools-discuss] Can't open spctools wiki
Eric Deutsch
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2017/05/10
[spctools-discuss] Can't open spctools wiki
xu
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2017/05/10
[spctools-discuss] can't open SPC tools wiki
xu
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2017/05/10
[spctools-discuss] Advanced TPP course July 19-21
Eric Deutsch
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2017/05/05
Re: [spctools-discuss] Comet can not perform search
钟传奇
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2017/05/05
Re: [spctools-discuss] Comet can not perform search
Jimmy Eng
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2017/05/05
[spctools-discuss] Re: Extended TMT multiplexing
Phil
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2017/05/03
[spctools-discuss] idconvert error
Emma Whittington
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2017/05/02
[spctools-discuss] ProteinProphet Error (TPP 5.0.0)
Marc Isaksson
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2017/04/30
[spctools-discuss] libra calculation
richard chiang
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2017/04/30
[spctools-discuss] libra calculation
richard chiang
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2017/04/26
Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread
J
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2017/04/25
Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread
Jimmy Eng
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2017/04/25
[spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread
Joe
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2017/04/21
Re: [spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file
Luis Mendoza
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2017/04/21
[spctools-discuss] Re: Beginner Problem - Data Conversion from .D to .mzXML
Yuqi Shi
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2017/04/21
[spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file
Yuqi Shi
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2017/04/14
Re: [spctools-discuss] Automatic spectral library download not working?
Luis Mendoza
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2017/04/14
Re: [spctools-discuss] Spectra assignment in libra/peptideprophet
Veit Schwaemmle
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2017/04/13
Re: [spctools-discuss] Spectra assignment in libra/peptideprophet
Luis Mendoza
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2017/04/13
Re: [spctools-discuss] TPP 4.8.0 installation issues on Ubuntu 14.04
sfghuis
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2017/04/07
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Joey Davis
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2017/04/07
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Jimmy Eng
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2017/04/07
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Luis Mendoza
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2017/04/07
Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8
richard chiang
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2017/04/07
Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8
richard chiang
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2017/04/07
Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8
richard chiang
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2017/04/06
RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8
Eric Deutsch
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2017/04/06
RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8
Eric Deutsch
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2017/04/06
[spctools-discuss] Parameters in X!tandem inputfile for itraq 8
richard chiang
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2017/04/06
Re: [spctools-discuss] Automatic spectral library download not working?
sfghuis
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2017/04/06
[spctools-discuss] Extended TMT multiplexing
Phil
-
2017/04/05
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Joey Davis
-
2017/04/05
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Luis Mendoza
-
2017/04/05
Re: [spctools-discuss] Automatic spectral library download not working?
Luis Mendoza
-
2017/04/05
[spctools-discuss] Automatic spectral library download not working?
sfghuis
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2017/04/04
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Joey Davis
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
Chih-Chiang Tsou
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
David Shteynberg
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
Chih-Chiang Tsou
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
David Shteynberg
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
Chih-Chiang Tsou
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2017/04/04
Re: [spctools-discuss] qualscore mzXML parse error
Jason Winget
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2017/04/04
Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
David Shteynberg
-
2017/04/04
[spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?
Chih-Chiang Tsou
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2017/03/17
RE: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!'
Eric Deutsch
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2017/03/17
Re: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!'
Luis Mendoza
-
2017/03/17
Re: [spctools-discuss] prevent xinteract from creating output?
Luis Mendoza
-
2017/03/17
Re: [spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop.
Luis Mendoza
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2017/03/17
Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error
Luis Mendoza
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2017/03/17
Re: [spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file
Luis Mendoza
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2017/03/17
Re: [spctools-discuss] Export to Spreadsheet function doesn't work
Luis Mendoza
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2017/03/17
Re: [spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found
Luis Mendoza
-
2017/03/14
[spctools-discuss] Comet search of data on D:\ [Windows 10] error
Joey Davis
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2017/03/09
[spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file
Murielle Ålund
-
2017/03/08
[spctools-discuss] Export to Spreadsheet function doesn't work
David Zhao
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2017/03/06
Re: [spctools-discuss] spectraST error
yuderuii
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2017/03/05
RE: [spctools-discuss] Database search of heavy isotope labeled peptides
Eric Deutsch
-
2017/03/03
[spctools-discuss] Database search of heavy isotope labeled peptides
Sim Kae Hwan
-
2017/03/02
Re: [spctools-discuss] Re: Libra quantification
Jimmy Eng
-
2017/03/02
Re: [spctools-discuss] Re: Libra quantification
Chris Barnes
-
2017/03/02
[spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found
Robert
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2017/03/01
[spctools-discuss] How does RT model in PeptideProphet work?
Ali
-
2017/03/01
Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file)
Mike Rightmire
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2017/03/01
RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file)
Eric Deutsch
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2017/03/01
Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file)
Mike Rightmire
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2017/03/01
RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file)
Eric Deutsch
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2017/03/01
[spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file)
Mike Rightmire
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2017/03/01
[spctools-discuss] tandem.exe command line parameters (other than the input.xml file)
Mike Rightmire
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2017/02/21
[spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!'
Mike Rightmire
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2017/02/15
[spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop.
Mike Rightmire
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2017/02/14
[spctools-discuss] prevent xinteract from creating output?
Jesse
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2017/02/14
Re: [spctools-discuss] TPP update paths, return code 512, printscreen attached
michaela . filiou
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2017/02/08
Re: [spctools-discuss] Problems installing TPP 5.0 on Linux
Luis Mendoza
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2017/02/08
Re: [spctools-discuss] Problems installing TPP 5.0 on Linux
Cedar McKay
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2017/02/08
Re: [spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz
Luis Mendoza
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2017/02/07
[spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz
Robert
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2017/02/02
Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows
Cedar McKay
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2017/02/02
Re: [spctools-discuss] Comet search not working in TPP; return code: 256
Francesca Barry
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2017/02/02
Re: [spctools-discuss] Comet search not working in TPP; return code: 256
Luis Mendoza
-
2017/02/02
Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows
Luis Mendoza
-
2017/02/02
Re: [spctools-discuss] Problems installing TPP 5.0 on Linux
Luis Mendoza
-
2017/02/02
[spctools-discuss] Problems installing TPP 5.0 on Linux
Cedar McKay
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2017/02/02
[spctools-discuss] msconvert not working with TPP 5.0 on windows
Cedar McKay
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2017/02/02
[spctools-discuss] TPP update paths error, return code 512
michaela . filiou
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2017/02/02
[spctools-discuss] update paths, command failed, return code:512
Michaela Filiou