FWIW, just doing something as simple as changing the name from "zz85-control-8-003-9" to "zz85-control-8-003-9y" allows the conversion to go through fine. Hopefully someone with time will look at the convoluted input handling in Tandem2XML as the logic being used to parse input file name and recognize file extensions is horribly broken.
On Fri, Aug 24, 2012 at 7:56 AM, Dave Trudgian <david.trudg...@utsouthwestern.edu> wrote: > Gautum, > > Maybe this is related to the problem I observed that seems filename > dependent: > > https://groups.google.com/d/topic/spctools-discuss/lp9qde0b2OU/discussion > > If you rename the files do they process correctly? Is there anything common > about the filenames of the 35 that don't work? If you run Tandem2XML against > the gzipped file does it work? > > DT > > If you try to run the command with the > > > On Friday, August 24, 2012 9:39:21 AM UTC-5, Gautam Saxena wrote: >> >> I have TPP v4.5 RAPTURE rev 2, Build 201208061232 (linux) on Centos 6.3 >> (all up to date, 64 bit) installed and pretty much working. For one project, >> though, we ran tandem2xml on 632 X!Tandem files. For 597 of such files, it >> converted fine. For 35 though, we got the "invalid pointer" error as >> follows: >> >>> *** glibc detected *** >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML: >>> free(): invalid pointer: 0x00000000016fba40 *** >>> ======= Backtrace: ========= >>> /lib64/libc.so.6[0x3e316753c6] >>> /usr/lib64/libstdc++.so.6(_ZNSsD1Ev+0x39)[0x3e34a9d4a9] >>> >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML[0x413821] >>> >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML[0x405f4e] >>> /lib64/libc.so.6(__libc_start_main+0xfd)[0x3e3161ecdd] >>> >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML[0x405c89] >>> ======= Memory map: ======== >>> 00400000-00469000 r-xp 00000000 00:18 32638052 >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML >>> 00669000-0066b000 rw-p 00069000 00:18 32638052 >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML >>> 0066b000-0066d000 rw-p 00000000 00:00 0 >>> 016f8000-01719000 rw-p 00000000 00:00 0 >>> [heap] >>> 3e31200000-3e31220000 r-xp 00000000 fd:00 6809 >>> /lib64/ld-2.12.so >>> 3e3141f000-3e31420000 r--p 0001f000 fd:00 6809 >>> /lib64/ld-2.12.so >>> 3e31420000-3e31421000 rw-p 00020000 fd:00 6809 >>> /lib64/ld-2.12.so >>> 3e31421000-3e31422000 rw-p 00000000 00:00 0 >>> 3e31600000-3e31789000 r-xp 00000000 fd:00 6810 >>> /lib64/libc-2.12.so >>> 3e31789000-3e31988000 ---p 00189000 fd:00 6810 >>> /lib64/libc-2.12.so >>> 3e31988000-3e3198c000 r--p 00188000 fd:00 6810 >>> /lib64/libc-2.12.so >>> 3e3198c000-3e3198d000 rw-p 0018c000 fd:00 6810 >>> /lib64/libc-2.12.so >>> 3e3198d000-3e31992000 rw-p 00000000 00:00 0 >>> 3e31e00000-3e31e17000 r-xp 00000000 fd:00 6811 >>> /lib64/libpthread-2.12.so >>> 3e31e17000-3e32017000 ---p 00017000 fd:00 6811 >>> /lib64/libpthread-2.12.so >>> 3e32017000-3e32018000 r--p 00017000 fd:00 6811 >>> /lib64/libpthread-2.12.so >>> 3e32018000-3e32019000 rw-p 00018000 fd:00 6811 >>> /lib64/libpthread-2.12.so >>> 3e32019000-3e3201d000 rw-p 00000000 00:00 0 >>> 3e32200000-3e32215000 r-xp 00000000 fd:00 48060 >>> /lib64/libz.so.1.2.3 >>> 3e32215000-3e32414000 ---p 00015000 fd:00 48060 >>> /lib64/libz.so.1.2.3 >>> 3e32414000-3e32415000 r--p 00014000 fd:00 48060 >>> /lib64/libz.so.1.2.3 >>> 3e32415000-3e32416000 rw-p 00015000 fd:00 48060 >>> /lib64/libz.so.1.2.3 >>> 3e32600000-3e32683000 r-xp 00000000 fd:00 4968 >>> /lib64/libm-2.12.so >>> 3e32683000-3e32882000 ---p 00083000 fd:00 4968 >>> /lib64/libm-2.12.so >>> 3e32882000-3e32883000 r--p 00082000 fd:00 4968 >>> /lib64/libm-2.12.so >>> 3e32883000-3e32884000 rw-p 00083000 fd:00 4968 >>> /lib64/libm-2.12.so >>> 3e33a00000-3e33a10000 r-xp 00000000 fd:00 6655 >>> /lib64/libbz2.so.1.0.4 >>> 3e33a10000-3e33c0f000 ---p 00010000 fd:00 6655 >>> /lib64/libbz2.so.1.0.4 >>> 3e33c0f000-3e33c11000 rw-p 0000f000 fd:00 6655 >>> /lib64/libbz2.so.1.0.4 >>> 3e34200000-3e34216000 r-xp 00000000 fd:00 6814 >>> /lib64/libgcc_s-4.4.6-20120305.so.1 >>> 3e34216000-3e34415000 ---p 00016000 fd:00 6814 >>> /lib64/libgcc_s-4.4.6-20120305.so.1 >>> 3e34415000-3e34416000 rw-p 00015000 fd:00 6814 >>> /lib64/libgcc_s-4.4.6-20120305.so.1 >>> 3e34a00000-3e34ae8000 r-xp 00000000 fd:00 6815 >>> /usr/lib64/libstdc++.so.6.0.13 >>> 3e34ae8000-3e34ce8000 ---p 000e8000 fd:00 6815 >>> /usr/lib64/libstdc++.so.6.0.13 >>> 3e34ce8000-3e34cef000 r--p 000e8000 fd:00 6815 >>> /usr/lib64/libstdc++.so.6.0.13 >>> 3e34cef000-3e34cf1000 rw-p 000ef000 fd:00 6815 >>> /usr/lib64/libstdc++.so.6.0.13 >>> 3e34cf1000-3e34d06000 rw-p 00000000 00:00 0 >>> 2adaee375000-2adaee376000 rw-p 00000000 00:00 0 >>> 2adaee382000-2adaee389000 rw-p 00000000 00:00 0 >>> 7fffc87d1000-7fffc87e6000 rw-p 00000000 00:00 0 >>> [stack] >>> 7fffc87ff000-7fffc8800000 r-xp 00000000 00:00 0 >>> [vdso] >>> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 >>> [vsyscall] >> >> >> >> The program was run as follows: >> >>> >>> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/Tandem2XML >>> zz85-control-8-003-9 0Cw6-zz85-control-8-003-9.pep.xml >> >> >> I have attached a zipped version of the input file, zz85-control-8-003-9. >> (Note, you'll need to unzip and then rename the file to get rid of the >> ".temp" suffix; then, you should be able to run the above command exactly as >> is.) >> >> Any clues? >> >> Thanks in advance. >> >> Regards, >> Gautam >> >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To view this discussion on the web visit > https://groups.google.com/d/msg/spctools-discuss/-/9ASFYEooFCMJ. > > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
