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RE: [spctools-discuss] problem to install TPP 5.2.0
Eric Deutsch
[spctools-discuss] Re: problem to install TPP 5.2.0
'Lars Brinkmann' via spctools-discuss
[spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) courses
Eric Deutsch
[spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) courses
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Whether PeptideProphet tool can be used to validate the PSM identified with different algorithm other than SEQUEST, TANDEM, COMET etc..
Sangeetha R
Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides
Jimmy Eng
Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides
Vidya Venkatraman
Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides
Jimmy Eng
Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides
Vidya Venkatraman
[spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
Alejandro
Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04
David Shteynberg
[spctools-discuss] TPP @ ASMS 2019 -- booth #118 + Tuesday Workshop
Luis Mendoza
[spctools-discuss] Libra qunatification error in window version 10
Syed Azmal Ali
[spctools-discuss] TPP 5.2 compile error Ubuntu 18.04
Alejandro
RE: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04
Eric Deutsch
Re: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04
Alejandro
Re: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04
Alejandro
[spctools-discuss] update iRT in an existing .splib library
Matthew Russell
[spctools-discuss] Re: update iRT in an existing .splib library
Henry Lam
Re: [spctools-discuss] Re: update iRT in an existing .splib library
Matthew Russell
Re: [spctools-discuss] Re: update iRT in an existing .splib library
Henry Lam
Re: [spctools-discuss] Re: update iRT in an existing .splib library
Matthew Russell
Re: [spctools-discuss] Re: update iRT in an existing .splib library
Matthew Russell
[spctools-discuss] Error spectrast create mode
Lei Wang
[spctools-discuss] Re: Error spectrast create mode
smdb
[spctools-discuss] Re: Error spectrast create mode
smdb
[spctools-discuss] Comet search for two constant modification on one amino acid
Kamal Mandal
[spctools-discuss] Xtandem searches crash and unable to kill command
Valdemir Melechco Carvalho
[spctools-discuss] Re: Xtandem searches crash and unable to kill command
Valdemir Melechco Carvalho
[spctools-discuss] TPP 5.2 Compile Error
Dean
Re: [spctools-discuss] TPP 5.2 Compile Error
David Shteynberg
Re: [spctools-discuss] TPP 5.2 Compile Error
Dean
[spctools-discuss] Processing an Output from StPeter in MSstats
Dmytro Morderer
[spctools-discuss] Combining the DIA Umpire results by iProphet
Ankit Balhara
[spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Felipe da Veiga Leprevost
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Ankit Balhara
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
David Shteynberg
RE: [EXT] Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Noel Carter
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Ankit Balhara
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
ilya gertsman
RE: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Eric Deutsch
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Alexey Nesvizhskii
[spctools-discuss] xinteract TPP v5.2.0 - exited with non-zero exit code: 139
Elva Liu
[spctools-discuss] StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason Winget
[spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason Winget
RE: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Eric Deutsch
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Luis Mendoza
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Luis Mendoza
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason
[spctools-discuss] PeptideProphet scores
Felipe da Veiga Leprevost
Re: [spctools-discuss] PeptideProphet scores
David Shteynberg
[spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
[spctools-discuss] Combining the data on two tissues in one library
Ankit Balhara
RE: [spctools-discuss] Combining the data on two tissues in one library
Eric Deutsch
Re: [spctools-discuss] Combining the data on two tissues in one library
Ankit Balhara
[spctools-discuss] TPP 5.2.0 Release is now available
Luis Mendoza
[spctools-discuss] Re: TPP Comet Peptide Prophet Error
magnus.palmb...@gmail.com
[spctools-discuss] TPP 5.1.0 installation and Perl
Amit Yadav
[spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
Michael Riffle
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
David Shteynberg
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
Michael Riffle
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
David Shteynberg
RE: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Michael Hoopmann
Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Goutham Vasam
Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Luis Mendoza
[spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Jesse Meyer
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Jesse Meyer
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
[spctools-discuss] mzXML - peak encoding/decoding
jeffreyavansanten
RE: [spctools-discuss] mzXML - peak encoding/decoding
Eric Deutsch
[spctools-discuss] Quantic vs St. Peter
Hampton, Brian
[spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
David Shteynberg
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
David Shteynberg
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
[spctools-discuss] Problem during spectrast library generation
Ankit Balhara
RE: [spctools-discuss] Problem during spectrast library generation
Eric Deutsch
Re: [spctools-discuss] Problem during spectrast library generation
Ankit Balhara
RE: [spctools-discuss] Problem during spectrast library generation
Eric Deutsch
[spctools-discuss] Re: Problem during spectrast library generation
Ankit Balhara
[spctools-discuss] A question about the Mayu
Ankit Balhara
[spctools-discuss] Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia
Ankit Balhara
[spctools-discuss] Re: Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia
Alejandro
Re: [spctools-discuss] Re: Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia
Ankit Balhara
[spctools-discuss] Anlaysis of MS-GF+ data using Peptideprophet tool of TPP GUI "Petunia"
Ankit Balhara
[spctools-discuss] xsl file not being created
Bronson Petterson
[spctools-discuss] Re: xsl file not being created
Jimmy Eng
[spctools-discuss] Re: A question about ProteinProphet
Le ZHENG
[spctools-discuss] Libra quantification for TMT 11-plex
Rachel Nadeau
Re: [spctools-discuss] Libra quantification for TMT 11-plex
Luis Mendoza
[spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts
alastair.skeffington via spctools-discuss
Re: [spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts
David Shteynberg
[spctools-discuss] Re: External Tools Export mzIdentML
guoguodigi...@msn.com
RE: [spctools-discuss] Re: External Tools Export mzIdentML
Eric Deutsch
[spctools-discuss] Failed in running ASAPRatio
Ruifeng Hu
Re: [spctools-discuss] Failed in running ASAPRatio
Ruifeng Hu
Re: [spctools-discuss] Failed in running ASAPRatio
David Shteynberg
Re: [spctools-discuss] Failed in running ASAPRatio
David Shteynberg
[spctools-discuss] root in TPP docker image 16899d782bad on Win 10?
Robert
RE: [spctools-discuss] root in TPP docker image 16899d782bad on Win 10?
Eric Deutsch
[spctools-discuss] simple text editor for TPP 5.2 docker?
Robert
RE: [spctools-discuss] simple text editor for TPP 5.2 docker?
Eric Deutsch
[spctools-discuss] working with replicate data and 15N labelled proteins
Gunjan Pandey
[spctools-discuss] How to set number of cores/threads/RAM in TPP
Gunjan Pandey
RE: [spctools-discuss] How to set number of cores/threads/RAM in TPP
Eric Deutsch
Re: [spctools-discuss] How to set number of cores/threads/RAM in TPP
Gunjan Pandey
[spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
RE: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Eric Deutsch
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert Winkler
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
David Shteynberg
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
[spctools-discuss] Linux version of TPP
Kamal Mandal
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
[spctools-discuss] Simple protXML to tsv converter (Python3)
Robert
[spctools-discuss] MSFragger: peptide prophet extended mass model
alastair.skeffington via spctools-discuss
Re: [spctools-discuss] MSFragger: peptide prophet extended mass model
David Shteynberg
Re: [spctools-discuss] MSFragger: peptide prophet extended mass model
alastair.skeffington via spctools-discuss
[spctools-discuss] Percolator stopped working using Kojak result files
Gabriella Gellen
RE: [spctools-discuss] Percolator stopped working using Kojak result files
Michael Hoopmann
Re: [spctools-discuss] Percolator stopped working using Kojak result files
Gabriella Gellen
RE: [spctools-discuss] Percolator stopped working using Kojak result files
Michael Hoopmann
[spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
Re: [spctools-discuss] Mascot2XML: decoys
David Shteynberg
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
Re: [spctools-discuss] Mascot2XML: decoys
David Shteynberg
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
[spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Robert
RE: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Eric Deutsch
Re: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Luis Mendoza
[spctools-discuss] Problems running xinteract in TPP5.1.0
JeBu42
[spctools-discuss] Running TPP/Petunia GUI with Docker
Robert
RE: [spctools-discuss] Running TPP/Petunia GUI with Docker
Eric Deutsch
Re: [spctools-discuss] Running TPP/Petunia GUI with Docker
Robert Winkler
Re: [spctools-discuss] Running TPP/Petunia GUI with Docker
Darryl Davis
RE: [spctools-discuss] Running TPP/Petunia GUI with Docker
Eric Deutsch
[spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
[spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert Winkler
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
[spctools-discuss] How to persive the multiple identified phospho peptide on the protein information
Syed Azmal Ali
[spctools-discuss] PeptideProphet Using Decoy Peptides to build the machine learning model but reject for selection
davisharif
[spctools-discuss] novor2xml questions
Emma Whittington
[spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
Alex Zelter
Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
David Shteynberg
Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
Alex Zelter
[spctools-discuss] Kojak
Kamal Mandal
RE: [spctools-discuss] Kojak
Michael Hoopmann
Re: [spctools-discuss] Kojak
Kamal Mandal
[spctools-discuss] Kojak FDR analysis
Kamal Mandal
[spctools-discuss] HELP PLEASE: InterPro .xml results importing into TPP pipeline?
Robyn Leigh Smith
[spctools-discuss] Re: HELP PLEASE: InterPro .xml results importing into TPP pipeline?
alastair.skeffington via spctools-discuss
[spctools-discuss] InterPro protein.xml file to TPP or ProteomeDiscoverer prot.xml file
Robyn Leigh Smith
[spctools-discuss] LibraPeptideParser double free or corruption (GNU/Linux) - TPP v5.2.0-b1
Jhoira Sakura
[spctools-discuss] Mapping disulfide bonds using Kojak
Eduardo Kitano
[spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
David Shteynberg
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
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