The problem is the idconvert generated pepxml is not compatible. I believe MyriMatch includes pepxml output directly. That's more likely to work.
David On Oct 15, 2014 10:06 PM, "李桂林" <liguilin...@gmail.com> wrote: > But now I get a new problem when I tried to run PeptideProphet (TPP 4.7.1) > for Myrimatch search result. > Here is how I do this > 1. search against a target-decoy database with Myrimatch > 2. transform the mzid file to pepXML using ProteoWizard idconvert > 3. run PeptideProphet with command 'path\to\xinteract -Nout.pep.xml -p0 > -l6 -OAP -Od -d###REV### input.pepXML' > The InteractParser terminated in an unusual way reporting error > Assertion failed: px != 0, file > c:\release_4-7-1\trans_proteomic_pipeline\extern\boost_1_54_0\boost\smart_ptr\shared_ptr.hpp, > line 653 > How this happen? Anyone know about this? > > 在 2014年10月16日星期四UTC+8上午10时09分53秒，李桂林写道： >> >> Yes, it works in TPP 4.7.1. Thank you very much! >> >> 在 2014年10月16日星期四UTC+8上午3时49分16秒，David Shteynberg写道： >>> >>> Does this also happen when you try the latest pipeline? The current >>> released version is 4.7.1. >>> >>> Thanks, >>> -David >>> >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups >>> > "spctools-discuss" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an >>> > email to spctools-discu...@googlegroups.com. >>> > To post to this group, send email to spctools...@googlegroups.com. >>> > Visit this group at http://groups.google.com/group/spctools-discuss. >>> > For more options, visit https://groups.google.com/d/optout. >>> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
