I just started using 4.8 on a 32 bit install of Win 7. Using Petunia I
began by converting Sciex .wiff files to mzML and got the following error
and output from this command:
NOTE: I can run the same command in a CMD window and it succeeds.
*c:\Inetpub\tpp-bin\msconvert
c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t/02Dec14-BH-RABA-Fxn1.wiff
-v --mzML -o c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t -z
--filter "peakPicking true [1,2]"*
format: mzML
m/z: Compression-Zlib, 64-bit
intensity: Compression-Zlib, 32-bit
rt: Compression-Zlib, 64-bit
ByteOrder_LittleEndian
indexed="true"
outputPath: c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t
extension: .mzML
contactFilename:
filters:
peakPicking true [1,2]
filenames:
c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t\02Dec14-BH-RABA-Fxn1.wiff
processing file:
c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t\02Dec14-BH-RABA-Fxn1.wiff
[WiffFileImpl::getSampleNames] The type initializer for
'Clearcore2.Data.WiffReader.WiffSampleRun' threw an exception.
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