Hi David, Indeed, the svn link I took from these instructions <http://tools.proteomecenter.org/wiki/index.php?title=TPP_6.1.0:_Installing_on_Ubuntu_20.04_LTS> is incorrect (and probably should be amended), while the link you advise (and appearing above in the announcement) is correct.
BTW - I would offer to amend them myself but am unable to see if I am allowed to have an account on the wiki - seemingly not. FWIW - I do now find that downloading and expanding the tarball is many times faster then using svn, so I will prefer it going forward. Thanks, ~Malcolm On Tuesday, June 7, 2022 at 5:53:04 PM UTC-5 David Shteynberg wrote: > Hi Malcolm, > > Thanks for your interest in the TPP. > I think your url has a mistake in it. Please try the following command: > > svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6-1-0 > <http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0> > > Cheers, > -David > > On Tue, Jun 7, 2022 at 3:44 PM Malcolm Cook <malcol...@gmail.com> wrote: > >> Hi, >> >> I am checking out again from the release_6.1.0 since my `make all` is >> problematic, I want to start over, and `make clean` seems perhaps >> incomplete in its cleaning. >> >> Alas I encounter this error whose workaround I can not guess: >> >> svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0 >> svn: E170000: URL ' >> http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0' doesn't exist >> >> >> On Tuesday, June 7, 2022 at 12:37:31 AM UTC-5 Luis wrote: >> >>> Hi Malcolm, >>> Thank you for the congrats, and for catching that in our build notes; we >>> will correct it soon. In the "Pulling from Sourceforge" section, just >>> follow the commented-out command instead of the last one: >>> >>> #svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0 >>> <----- this one; remove the leading pound sign >>> svn checkout >>> http://svn.code.sf.net/p/sashimi/code/trunk/trans_proteomic_pipeline >>> <---- not this one >>> >>> >>> As of tonight, though, the trunk code is still virtually identical to >>> what is tagged as release_6.1.0, so it should work fine. >>> >>> Let us know if you run into any other issues. >>> >>> Thank you for using TPP! >>> --Luis >>> >>> >>> On Mon, Jun 6, 2022 at 10:04 PM malcook <malcol...@gmail.com> wrote: >>> >>>> Congrats on the new release. >>>> >>>> You will probably want to modify these instructions >>>> <http://tools.proteomecenter.org/wiki/index.php?title=TPP_6.1.0:_Installing_on_Ubuntu_20.04_LTS>which >>>> >>>> still advise to download from trunk. >>>> >>>> I just followed them. >>>> >>>> Should I still expect this to work satisfactorily? >>>> >>>> Thanks >>>> >>>> On Friday, June 3, 2022 at 3:23:19 AM UTC-5 Luis wrote: >>>> >>>>> Announcing the official release of Trans-Proteomic Pipeline (TPP) >>>>> 6.1.0 "Parhelion" >>>>> >>>>> We are proud to offer a major update to the Trans-Proteomic Pipeline >>>>> (TPP) software, release 6.1.0. The software is available for Windows as >>>>> well as Linux from all the usual locations (please see the section below, >>>>> "Getting the TPP Software"). Most users are recommended to use the >>>>> Windows >>>>> installer, which installs and configures TPP and other required software, >>>>> such as a web server. For advanced users who need to customize TPP, or >>>>> for >>>>> those who run on Linux or OS X, the source code can be downloaded. >>>>> >>>>> >>>>> *Release Notes * >>>>> Release notes on the most important new features, changes, and known >>>>> issues are available at: >>>>> >>>>> http://tools.proteomecenter.org/wiki/index.php?title=TPP:6.1.0_Release_Notes >>>>> >>>>> >>>>> *Getting the TPP Software* >>>>> Download the TPP version 6.1.0 native windows installer from the >>>>> Sashimi SourceForge project file release page: >>>>> https://sourceforge.net/projects/sashimi/files/Trans-Proteomic >>>>> Pipeline (TPP)/TPP v6.1 (Parhelion) rev 0/ >>>>> >>>>> Everyone is encouraged to read and contribute to our wiki, at >>>>> http://tools.proteomecenter.org/wiki/ >>>>> >>>>> For guides to installing and using our software, please see our wiki: >>>>> http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP >>>>> >>>>> For downloading the source code, please go to the following link: >>>>> http://sourceforge.net/projects/sashimi/files/ and find the 6.1.0 >>>>> source code .zip package >>>>> or, check out the code directly from svn: >>>>> svn export svn://svn.code.sf.net/p/sashimi/code/tags/release_6-1-0 >>>>> >>>>> For building from source, please refer to the README and INSTALL files >>>>> in src/ directory of TPP as well as the wiki. >>>>> >>>>> >>>>> *Acknowledgements* >>>>> The TPP Team: David, Luis, Mike, Eric, Jimmy, plus all other >>>>> developers who contributed to this release from ISB. Thanks to >>>>> developers >>>>> and users from the TPP's user community who also provided feedback and >>>>> code >>>>> contributions. >>>>> >>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/60dc756c-e679-4a3a-bd6b-74856abfe499n%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/spctools-discuss/60dc756c-e679-4a3a-bd6b-74856abfe499n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/c874b6a5-f866-40bc-b103-cffb5c939acdn%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/c874b6a5-f866-40bc-b103-cffb5c939acdn%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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