Thank you will look into it. Best regards Arpita On Fri, Dec 27, 2024, 02:10 Sebastian Paez <[email protected]> wrote:
> Hi there! > > I have not been able to make pwiz-docker run in a mac computer (at least > with M-series macs) but was able to use thermorawfileparser. > https://github.com/compomics/ThermoRawFileParser > LMK if either of those options work for you! > > Best > -Sebastian > > > On Thursday, 28 November 2024 at 11:04:33 UTC-6 ARPITA TIWARI wrote: > >> Okay I will try to do it. Thank you very much. >> Best >> Arpita >> >> On Thu, Nov 28, 2024, 20:29 Robert Winkler <[email protected]> >> wrote: >> >>> Hi, you can convert the raw data to mzML on any computer that runs >>> docker. E.g. I use this strategy to convert Thermo files on a Linux System. >>> The chambm container simulates a Windows system and contains the necessary >>> vendor libraries. My command looks like this from the command line: >>> >>> docker run -it -v /home/antix/Downloads/ThermoDDA:/data >>> chambm/pwiz-skyline-i-agree-to-the-vendor-licenses wine msconvert >>> /data/*.raw >>> >>> Best, Robert >>> On Wednesday, 27 November 2024 at 12:00:18 UTC-6 David Shteynberg wrote: >>> >>>> Hello Arpita, >>>> >>>> Unfortunately, DLL files are Windows specific and do not function on >>>> Mac. Whether or not Thermo is planning on providing RAW data access >>>> libraries that function on Mac is a question for Thermo, but I suspect this >>>> is not a top priority for most customers. I hope you are able to convert >>>> your data to open formats on another computer and then continue using the >>>> TPP on your Mac. >>>> >>>> Best, >>>> -David >>>> >>>> On Tue, Nov 26, 2024 at 8:37 PM 'ARPITA TIWARI' via spctools-discuss < >>>> [email protected]> wrote: >>>> >>>>> Sorry to disturb you but can I know why is it not possible on Mac? Why >>>>> does Thermo libraries work in windows only? Is there any other solution ? >>>>> Best regards >>>>> Arpita >>>>> >>>>> On Wed, Nov 27, 2024 at 9:20 AM ARPITA TIWARI <[email protected]> >>>>> wrote: >>>>> >>>>>> Dear David, >>>>>> Okay will do that, thank you so much for your response. >>>>>> Best regards >>>>>> Arpita >>>>>> >>>>>> On Wed, Nov 27, 2024 at 9:01 AM 'David Shteynberg' via >>>>>> spctools-discuss <[email protected]> wrote: >>>>>> >>>>>>> Hello Arpita, >>>>>>> >>>>>>> Thanks for your question. Conversion from RAW happens with the help >>>>>>> of Thermo dll libraries which only function on windows. To process >>>>>>> proteomics data with TPP on a Mac you have to start with mzML or mzXML >>>>>>> data >>>>>>> and convert the data on another computer. >>>>>>> >>>>>>> Best, >>>>>>> David >>>>>>> >>>>>>> >>>>>>> On Tue, Nov 26, 2024, 7:27 PM 'ARPITA TIWARI' via spctools-discuss < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>>> Hello everyone, >>>>>>>> I have attached the following error below I have installed the TPP >>>>>>>> in M1 MAC os with the help of source link. Now I am trying to convert >>>>>>>> .raw >>>>>>>> file into mxML. Somehow, it isn"t happening. >>>>>>>> I will be grateful if anyone an solve this problem. >>>>>>>> Thank you >>>>>>>> Best regards >>>>>>>> Arpita >>>>>>>> [image: Screenshot 2024-11-27 at 7.43.09 AM.png][image: Screenshot >>>>>>>> 2024-11-27 at 8.29.55 AM.png] >>>>>>>> >>>>>>>> >>>>>>>> [image: >>>>>>>> https://www.linkedin.com/in/gujarat-biotechnology-university] >>>>>>>> <https://www.linkedin.com/in/gujarat-biotechnology-university> [image: >>>>>>>> https://www.facebook.com/Gujarat-Biotechnology-University-101550609248432] >>>>>>>> <https://www.facebook.com/Gujarat-Biotechnology-University-101550609248432>[image: >>>>>>>> https://goo.gl/maps/xEm5CnhHXv21cehZ7] >>>>>>>> <https://g.page/r/CbFLDpwlBbq7EBM/review> [image: >>>>>>>> https://gbu.edu.in/images/footer/yt11.png] >>>>>>>> <https://www.youtube.com/@gujaratbiotechnologyuniver1740> [image: >>>>>>>> https://www.instagram.com/gujaratbiotechnologyuniversity/] >>>>>>>> <https://www.instagram.com/gujaratbiotechnologyuniversity/>[image: >>>>>>>> https://twitter.com/GujBiotechUni] >>>>>>>> <https://twitter.com/GujBiotechUni> >>>>>>>> This message contains confidential information and is intended only >>>>>>>> for the individual named. 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