Thanks for the comments.

Yes we did look at this before we posted our original plea for help. We have a 
BEGIN/COMMIT around all the relevant code.

Rob

> On 4 Jul 2015, at 20:28, droedel <sqlite at droedel.fastmail.fm> wrote:
> 
> Rob Willett <rob.sqlite at ...> writes:
> 
> [snip]
>> The headline figures are we have gone from 213 secs to process 20 files
> down to 90 secs to process 20 files. We
>> are running approx 2.5x faster. To get this improvement the biggest change
> was simply adding COLLATE
>> NOCASE to the table schema. This saved around 120-130 secs which was
> brilliant. 
>> 
> 
> Did you consider putting all SELECT-statements in an explicit transaction
> (BEGIN TRANSACTION / COMMIT) ? When the statements are in one transaction,
> sqlite only needs to acquire/release the lock once. During some benchmark
> tests I did a few years ago, this reduced query time from 640 ms to 210 ms
> for 10 000 trivial SELECT statements.
> 
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