Hi, I don't think this has been implemented yet. I know a few people have asked for this - me being one.
WRT Exonerate: I think the best person to speak to is the person who developed it (Guy Slater). He may be able to provide a Web Service for you. If not, then you can download the source code from the given Web site, then wrap it as a service yourself (possibly with Soaplab - though you may need to check this). Again, contact Guy first before you do. He may not want you doing that. A final alternative is to use another sequence alignment tool- maybe ClustalW or something similar that does have a Web Service interface at the EBI. Hope that helps (a little). regards, Paul. Xavier Watkins wrote: > Hello, > I've just started using Taverna 2.0 and I'm having problems with > "Activities". It's running it on OS X 1.5.6 leopard. > > I'm trying to set up a genome annotation pipeline with Genscan, > RepeatMasker and Exonerate and although I manage to add the WSDL for > these fine, if I then quit and relanch the software they're not in the > list of available activities anymore... > I was wondering where they are saved, I assume it's somewhere in > Application\ Support/taverna-2.0/ ? > > The URLS I found for these services are below (Genscan & RepeatMasker): > http://staff.vbi.vt.edu/pathport/services/wsdls/genscan.wsdl > http://biomoby.org/services/genome.imim.es/runRepeatMasker > > I didn't manage to find any webservice running exonerate, could > anybody recommend me one, and maybe alternatives to the ones above? > > Also I was wondering if Taverna has previously been used for large > scale genome analysis? > > Many thanks, > Xavier > > ------------------------------------------------------------------------------ > Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA > -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise > -Strategies to boost innovation and cut costs with open source participation > -Receive a $600 discount off the registration fee with the source code: SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > taverna-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/taverna-users > Documentation: http://www.mygrid.org.uk/usermanual1.7/ > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > Biological Services: > http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices > ------------------------------------------------------------------------------ Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H _______________________________________________ taverna-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/taverna-users Documentation: http://www.mygrid.org.uk/usermanual1.7/ FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
