Hello, Saving activities is on the to do list (sorry) but is not scheduled yet. It is definitely something that needs to be done (gets requested quite often). Large scale genome analysis? Probably, I'll hand that one over to our bio-informaticians.
Cheers, Ian Ian Dunlop myGrid team School of Computer Science University of Manchester On 4 Mar 2009, at 11:57, Xavier Watkins wrote: > Hello, > I've just started using Taverna 2.0 and I'm having problems with > "Activities". It's running it on OS X 1.5.6 leopard. > > I'm trying to set up a genome annotation pipeline with Genscan, > RepeatMasker and Exonerate and although I manage to add the WSDL for > these fine, if I then quit and relanch the software they're not in the > list of available activities anymore... > I was wondering where they are saved, I assume it's somewhere in > Application\ Support/taverna-2.0/ ? > > The URLS I found for these services are below (Genscan & > RepeatMasker): > http://staff.vbi.vt.edu/pathport/services/wsdls/genscan.wsdl > http://biomoby.org/services/genome.imim.es/runRepeatMasker > > I didn't manage to find any webservice running exonerate, could > anybody recommend me one, and maybe alternatives to the ones above? > > Also I was wondering if Taverna has previously been used for large > scale genome analysis? > > Many thanks, > Xavier > > ------------------------------------------------------------------------------ > Open Source Business Conference (OSBC), March 24-25, 2009, San > Francisco, CA > -OSBC tackles the biggest issue in open source: Open Sourcing the > Enterprise > -Strategies to boost innovation and cut costs with open source > participation > -Receive a $600 discount off the registration fee with the source > code: SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > taverna-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/taverna-users > Documentation: http://www.mygrid.org.uk/usermanual1.7/ > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > Biological Services: > http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices ------------------------------------------------------------------------------ Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H _______________________________________________ taverna-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/taverna-users Documentation: http://www.mygrid.org.uk/usermanual1.7/ FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
