> I can't give you much direct help, but both as a tip and a test: have  you 
> tried looking for helpful examples on myExperiment.org?


Yes, for example, I had a look at this workflow: 

            http://www.myexperiment.org/workflows/70

but it doesn't tell me how I can find the right nodes to create my own workflow 
from scratch :-)


> I am curious how you would use UCSC data. The last time I looked (which is a 
> while ago) there were no Web Services for UCSC genome data. These would be 
> very valuable to me and many others I think.

I was thinking of the UCSC mysql anonymous server rather than a webservice.

http://genome.ucsc.edu/FAQ/FAQdownloads#download29

Pierre




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