2009/4/22 Mahmut Uludag <[email protected]>
> Hi Achille,
>
> > Because I tried to use directly the processor "fproml" by EMBOSS in
> > Taverna "Soaplab @
> > <http://www.ebi.ac.uk/soaplab/emboss4/services/>
> http://www.ebi.ac.uk/soaplab/emboss4/services/";
> > but it
> > has a limit in the number of sequences alignments!? till I use a multiple
> > alignment of 16 sequences I have no problem, if i try to use 17 seqs or
> > more the task fails!!
>
> It looks like execution of your fproml jobs requires more time than one
> of the timeout limits involved while calling the service and retrieving
> the results. One possible suspect is EBI connection timeout limit which
> is 5 minutes, as far as i know.
>
> I just made a test with taverna polling support and were able to
> retrieve results for a fproml job which took 20 minutes. For this I have
> right clicked my fproml soaplab processor then selected 'Configure
> polling properties' option. In the menu window opened selected the
> 'Polling' check box and press 'Apply' button. Then run the workflow with
> a multiple alignment of 25 sequences.
>
> Regards,
> Mahmut
>
Thank you for your help guys!
I know I can count on you
"it was so easy" , I am still a little ignorant about the secrets and right
use of all these different web services
best regards
Achille
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