Hi, Have you tried to merge the list of files twice, i.e. two merge services? Also, do you need to merge them on a ',' or '\n'. If you do it on '\n' you don't need to specify the operator for the merge.
I'm not sure if the separator ',' actually works. Try it on two simple strings first. Hope that helps a little. Paul. halford e. (eh506) wrote: > Dear all > > I am making a workflow with a blast and a multiple sequence alignment > service. These are connected up using a couple of services. > 'Merge_string_list_to_string' is used to merge the hitID output from the > blast search into a string. This string is then inputted into 'fetchBatch' to > get the sequences to be inputted into the multiple sequence alignment service. > This is all as done in a workflow on myExperiment called > 'Protein_search_fetch_align_tree'. > > Just like in this myE workflow... > > For 'merge_string_list_to_string' I set: > separator to ',' > > For 'fetchBatch' I set: > format to 'fasta' > style to 'raw' > > However, in my workflow the sequences (the output of fetchBatch') are in a > list so when you save them there is a sequence to a file, whereas in the myE > workflow the sequences are all in the same file. > Does anyone know what I am doing wrong? > > I think that it is affecting the workflow downstream. > > Thank you > > Emily Halford > > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
