On 25/11/2010 15:50, Raphaël Flores wrote: > Hi all, Hello
> I need your light about a problem I get. In workbench 2.2.1, I can > execute and get result of a simple workflow (one in attachment) > successfully - however moby data parser seems to not receive data at its > input port (in progress report tab), don't know if it is a bug or else, Yes. This is a bug. It is entered into our bug tracking system under http://www.mygrid.org.uk/dev/issues/browse/T2-1529 . The problem is caused by the strange names of the Moby ports. The bug is due to be fixed for Taverna 2.3. > anyway parsed result are clearly available in workflow swiss_prot_entry > output. > > When using command line tool 2.2.0 the workflow is stopped and a Moby > exception is thrown as seen in swissprot_entry_moby output file: > > <moby:MOBY xmlns:moby="http://www.biomoby.org/moby";> > <moby:mobyContent> > <moby:serviceNotes> > <moby:mobyException moby:refQueryID="a0"> > <moby:exceptionCode>600</moby:exceptionCode> > <moby:exceptionMessage>Nothing was found for the given id ('P13637 > ')</moby:exceptionMessage> > </moby:mobyException> > </moby:serviceNotes> > <moby:mobyData moby:queryID="a0" /> > </moby:mobyContent> > </moby:MOBY> I was not able to reproduce the problem. I got an outputfile called swissprot_entry_moby containing the same output as the workbench generates. Do you always get this error? Do you get it with other accession numbers? Are you able to run other workflows OK? > Why is there a difference when calling the webservice whether I use the > workbench or command line tool? There should not be. > Is it a bug or did I miss something? I don't know yet :-) > Thanks for your help. Alan ------------------------------------------------------------------------------ Increase Visibility of Your 3D Game App & Earn a Chance To Win $500! Tap into the largest installed PC base & get more eyes on your game by optimizing for Intel(R) Graphics Technology. Get started today with the Intel(R) Software Partner Program. Five $500 cash prizes are up for grabs. http://p.sf.net/sfu/intelisp-dev2dev _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
