There is no standard interface for GPSDOs,  but the Trimble TSIP interface as 
used by the Thunderbolt/Lady Heather would be an excellent place to start and 
include.   Make the unit smart enough to run unattended,  but add enough 
monitoring commands so Lady Heather, etc can be used to monitor and tweak it... 
 it will save you a lot of work and Lady Heather's graphing and logging 
features provide great insights into its operation,  performance,  and quirks.  
                                     
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