bq. This runs successfully if I split this into 2 files, but I'd like to avoid doing that. do you run a different job for each file?
if your HBase cluster is not co-located with your yarn cluster then it may be possible that copying of large HFile is timing out(this may happen due to the fewer regions in HBase table or hot-spotting). you can check your output directory for file sizes and see if you are hitting this problem. Consider increasing the time-out or splitting the hot region. On Thu, Sep 7, 2017 at 5:25 AM, Ted Yu <yuzhih...@gmail.com> wrote: > bq. hbase.bulkload.retries.retryOnIOException is disabled. Unable to > recover > > The above is from HBASE-17165. > > See if the load can pass after enabling the config. > > On Wed, Sep 6, 2017 at 3:11 PM, Sriram Nookala <sri...@firstfuel.com> > wrote: > >> It finally times out with these exceptions >> >> ed Sep 06 21:38:07 UTC 2017, RpcRetryingCaller{globalStartTime=1504731276347, >> pause=100, retries=35}, java.io.IOException: Call to >> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local exception: >> org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=77, >> waitTime=60001, operationTimeout=60000 expired. >> >> >> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet >> ries(RpcRetryingCaller.java:159) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.tryA >> tomicRegionLoad(LoadIncrementalHFiles.java:956) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2. >> call(LoadIncrementalHFiles.java:594) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2. >> call(LoadIncrementalHFiles.java:590) >> >> at java.util.concurrent.FutureTask.run(FutureTask.java:266) >> >> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPool >> Executor.java:1142) >> >> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoo >> lExecutor.java:617) >> >> at java.lang.Thread.run(Thread.java:745) >> >> Caused by: java.io.IOException: Call to ip-10-123-0-60.ec2.internal/10 >> .123.0.60:16020 failed on local exception: >> org.apache.hadoop.hbase.ipc.CallTimeoutException: >> Call id=77, waitTime=60001, operationTimeout=60000 expired. >> >> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.wrapException( >> AbstractRpcClient.java:292) >> >> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl >> .java:1274) >> >> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.callBlockingMe >> thod(AbstractRpcClient.java:227) >> >> at org.apache.hadoop.hbase.ipc.AbstractRpcClient$BlockingRpcCha >> nnelImplementation.callBlockingMethod(AbstractRpcClient.java:336) >> >> at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ >> ClientService$BlockingStub.bulkLoadHFile(ClientProtos.java:35408) >> >> at org.apache.hadoop.hbase.protobuf.ProtobufUtil.bulkLoadHFile( >> ProtobufUtil.java:1676) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3. >> call(LoadIncrementalHFiles.java:656) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3. >> call(LoadIncrementalHFiles.java:645) >> >> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet >> ries(RpcRetryingCaller.java:137) >> >> ... 7 more >> >> Caused by: org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=77, >> waitTime=60001, operationTimeout=60000 expired. >> >> at org.apache.hadoop.hbase.ipc.Call.checkAndSetTimeout(Call.java:73) >> >> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl >> .java:1248) >> >> ... 14 more >> >> 17/09/06 21:38:07 ERROR mapreduce.LoadIncrementalHFiles: >> hbase.bulkload.retries.retryOnIOException is disabled. Unable to recover >> >> 17/09/06 21:38:07 INFO zookeeper.ZooKeeper: Session: 0x15e58ca21fc004c >> closed >> >> 17/09/06 21:38:07 INFO zookeeper.ClientCnxn: EventThread shut down >> >> Exception in thread "main" java.io.IOException: BulkLoad encountered an >> unrecoverable problem >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk >> LoadPhase(LoadIncrementalHFiles.java:614) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >> lkLoad(LoadIncrementalHFiles.java:463) >> >> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >> lkLoad(LoadIncrementalHFiles.java:373) >> >> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu >> lkload(AbstractBulkLoadTool.java:355) >> >> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob( >> AbstractBulkLoadTool.java:332) >> >> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A >> bstractBulkLoadTool.java:270) >> >> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra >> ctBulkLoadTool.java:183) >> >> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70) >> >> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84) >> >> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa >> dTool.java:101) >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> >> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce >> ssorImpl.java:62) >> >> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe >> thodAccessorImpl.java:43) >> >> at java.lang.reflect.Method.invoke(Method.java:498) >> >> at org.apache.hadoop.util.RunJar.run(RunJar.java:221) >> >> at org.apache.hadoop.util.RunJar.main(RunJar.java:136) >> >> Caused by: org.apache.hadoop.hbase.client.RetriesExhaustedException: >> Failed after attempts=35, exceptions: >> >> Wed Sep 06 20:55:36 UTC 2017, >> RpcRetryingCaller{globalStartTime=1504731276347, >> pause=100, retries=35}, java.io.IOException: Call to >> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local exception: >> org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=9, >> waitTime=60002, operationTimeout=60000 expired. >> >> On Wed, Sep 6, 2017 at 5:01 PM, Sriram Nookala <sri...@firstfuel.com> >> wrote: >> >>> Phoenix 4.11.0, HBase 1.3.1 >>> >>> This is what I get from jstack >>> >>> "main" #1 prio=5 os_prio=0 tid=0x00007fb3d0017000 nid=0x5de7 waiting on >>> condition [0x00007fb3d75f7000] >>> >>> java.lang.Thread.State: WAITING (parking) >>> >>> at sun.misc.Unsafe.park(Native Method) >>> >>> - parking to wait for <0x00000000f2222588> (a >>> java.util.concurrent.FutureTask) >>> >>> at java.util.concurrent.locks.LockSupport.park(LockSupport.java:175) >>> >>> at java.util.concurrent.FutureTask.awaitDone(FutureTask.java:429) >>> >>> at java.util.concurrent.FutureTask.get(FutureTask.java:191) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk >>> LoadPhase(LoadIncrementalHFiles.java:604) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>> lkLoad(LoadIncrementalHFiles.java:463) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>> lkLoad(LoadIncrementalHFiles.java:373) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu >>> lkload(AbstractBulkLoadTool.java:355) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob( >>> AbstractBulkLoadTool.java:332) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A >>> bstractBulkLoadTool.java:270) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra >>> ctBulkLoadTool.java:183) >>> >>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70) >>> >>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84) >>> >>> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa >>> dTool.java:101) >>> >>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >>> >>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce >>> ssorImpl.java:62) >>> >>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe >>> thodAccessorImpl.java:43) >>> >>> at java.lang.reflect.Method.invoke(Method.java:498) >>> >>> at org.apache.hadoop.util.RunJar.run(RunJar.java:221) >>> >>> at org.apache.hadoop.util.RunJar.main(RunJar.java:136) >>> >>> >>> >>> >>> On Wed, Sep 6, 2017 at 4:16 PM, Sergey Soldatov < >>> sergeysolda...@gmail.com> wrote: >>> >>>> Do you have more details on the version of Phoenix/HBase you are using >>>> as well as how it hangs (Exceptions/messages that may help to understand >>>> the problem)? >>>> >>>> Thanks, >>>> Sergey >>>> >>>> On Wed, Sep 6, 2017 at 1:13 PM, Sriram Nookala <sri...@firstfuel.com> >>>> wrote: >>>> >>>>> I'm trying to load a 3.5G file with 60 million rows using >>>>> CsvBulkLoadTool. It hangs while loading HFiles. This runs successfully if >>>>> I >>>>> split this into 2 files, but I'd like to avoid doing that. This is on >>>>> Amazon EMR, is this an issue due to disk space or memory. I have a single >>>>> master and 2 region server configuration with 16 GB memory on each node. >>>>> >>>> >>>> >>> >> >