Thanks, setting hbase.bulkload.retries.retryOnIOException to true in the configuration worked. My Hbase cluster is colocated with the Yarn cluster on EMR.
On Thu, Sep 7, 2017 at 4:08 AM, Ankit Singhal <[email protected]> wrote: > bq. This runs successfully if I split this into 2 files, but I'd like to > avoid doing that. > do you run a different job for each file? > > if your HBase cluster is not co-located with your yarn cluster then it may > be possible that copying of large HFile is timing out(this may happen due > to the fewer regions in HBase table or hot-spotting). you can check your > output directory for file sizes and see if you are hitting this problem. > Consider increasing the time-out or splitting the hot region. > > > > > On Thu, Sep 7, 2017 at 5:25 AM, Ted Yu <[email protected]> wrote: > >> bq. hbase.bulkload.retries.retryOnIOException is disabled. Unable to >> recover >> >> The above is from HBASE-17165. >> >> See if the load can pass after enabling the config. >> >> On Wed, Sep 6, 2017 at 3:11 PM, Sriram Nookala <[email protected]> >> wrote: >> >>> It finally times out with these exceptions >>> >>> ed Sep 06 21:38:07 UTC 2017, >>> RpcRetryingCaller{globalStartTime=1504731276347, >>> pause=100, retries=35}, java.io.IOException: Call to >>> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local >>> exception: org.apache.hadoop.hbase.ipc.CallTimeoutException: Call >>> id=77, waitTime=60001, operationTimeout=60000 expired. >>> >>> >>> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet >>> ries(RpcRetryingCaller.java:159) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.tryA >>> tomicRegionLoad(LoadIncrementalHFiles.java:956) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.ca >>> ll(LoadIncrementalHFiles.java:594) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$2.ca >>> ll(LoadIncrementalHFiles.java:590) >>> >>> at java.util.concurrent.FutureTask.run(FutureTask.java:266) >>> >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPool >>> Executor.java:1142) >>> >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoo >>> lExecutor.java:617) >>> >>> at java.lang.Thread.run(Thread.java:745) >>> >>> Caused by: java.io.IOException: Call to ip-10-123-0-60.ec2.internal/10 >>> .123.0.60:16020 failed on local exception: >>> org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=77, >>> waitTime=60001, operationTimeout=60000 expired. >>> >>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.wrapException( >>> AbstractRpcClient.java:292) >>> >>> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl >>> .java:1274) >>> >>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient.callBlockingMe >>> thod(AbstractRpcClient.java:227) >>> >>> at org.apache.hadoop.hbase.ipc.AbstractRpcClient$BlockingRpcCha >>> nnelImplementation.callBlockingMethod(AbstractRpcClient.java:336) >>> >>> at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$Clie >>> ntService$BlockingStub.bulkLoadHFile(ClientProtos.java:35408) >>> >>> at org.apache.hadoop.hbase.protobuf.ProtobufUtil.bulkLoadHFile( >>> ProtobufUtil.java:1676) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3.ca >>> ll(LoadIncrementalHFiles.java:656) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles$3.ca >>> ll(LoadIncrementalHFiles.java:645) >>> >>> at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRet >>> ries(RpcRetryingCaller.java:137) >>> >>> ... 7 more >>> >>> Caused by: org.apache.hadoop.hbase.ipc.CallTimeoutException: Call >>> id=77, waitTime=60001, operationTimeout=60000 expired. >>> >>> at org.apache.hadoop.hbase.ipc.Call.checkAndSetTimeout(Call.java:73) >>> >>> at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl >>> .java:1248) >>> >>> ... 14 more >>> >>> 17/09/06 21:38:07 ERROR mapreduce.LoadIncrementalHFiles: >>> hbase.bulkload.retries.retryOnIOException is disabled. Unable to recover >>> >>> 17/09/06 21:38:07 INFO zookeeper.ZooKeeper: Session: 0x15e58ca21fc004c >>> closed >>> >>> 17/09/06 21:38:07 INFO zookeeper.ClientCnxn: EventThread shut down >>> >>> Exception in thread "main" java.io.IOException: BulkLoad encountered an >>> unrecoverable problem >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk >>> LoadPhase(LoadIncrementalHFiles.java:614) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>> lkLoad(LoadIncrementalHFiles.java:463) >>> >>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>> lkLoad(LoadIncrementalHFiles.java:373) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu >>> lkload(AbstractBulkLoadTool.java:355) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob( >>> AbstractBulkLoadTool.java:332) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A >>> bstractBulkLoadTool.java:270) >>> >>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra >>> ctBulkLoadTool.java:183) >>> >>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70) >>> >>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84) >>> >>> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa >>> dTool.java:101) >>> >>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >>> >>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce >>> ssorImpl.java:62) >>> >>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe >>> thodAccessorImpl.java:43) >>> >>> at java.lang.reflect.Method.invoke(Method.java:498) >>> >>> at org.apache.hadoop.util.RunJar.run(RunJar.java:221) >>> >>> at org.apache.hadoop.util.RunJar.main(RunJar.java:136) >>> >>> Caused by: org.apache.hadoop.hbase.client.RetriesExhaustedException: >>> Failed after attempts=35, exceptions: >>> >>> Wed Sep 06 20:55:36 UTC 2017, >>> RpcRetryingCaller{globalStartTime=1504731276347, >>> pause=100, retries=35}, java.io.IOException: Call to >>> ip-10-123-0-60.ec2.internal/10.123.0.60:16020 failed on local >>> exception: org.apache.hadoop.hbase.ipc.CallTimeoutException: Call id=9, >>> waitTime=60002, operationTimeout=60000 expired. >>> >>> On Wed, Sep 6, 2017 at 5:01 PM, Sriram Nookala <[email protected]> >>> wrote: >>> >>>> Phoenix 4.11.0, HBase 1.3.1 >>>> >>>> This is what I get from jstack >>>> >>>> "main" #1 prio=5 os_prio=0 tid=0x00007fb3d0017000 nid=0x5de7 waiting on >>>> condition [0x00007fb3d75f7000] >>>> >>>> java.lang.Thread.State: WAITING (parking) >>>> >>>> at sun.misc.Unsafe.park(Native Method) >>>> >>>> - parking to wait for <0x00000000f2222588> (a >>>> java.util.concurrent.FutureTask) >>>> >>>> at java.util.concurrent.locks.LockSupport.park(LockSupport.java:175) >>>> >>>> at java.util.concurrent.FutureTask.awaitDone(FutureTask.java:429) >>>> >>>> at java.util.concurrent.FutureTask.get(FutureTask.java:191) >>>> >>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.bulk >>>> LoadPhase(LoadIncrementalHFiles.java:604) >>>> >>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>>> lkLoad(LoadIncrementalHFiles.java:463) >>>> >>>> at org.apache.hadoop.hbase.mapreduce.LoadIncrementalHFiles.doBu >>>> lkLoad(LoadIncrementalHFiles.java:373) >>>> >>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.completebu >>>> lkload(AbstractBulkLoadTool.java:355) >>>> >>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.submitJob( >>>> AbstractBulkLoadTool.java:332) >>>> >>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.loadData(A >>>> bstractBulkLoadTool.java:270) >>>> >>>> at org.apache.phoenix.mapreduce.AbstractBulkLoadTool.run(Abstra >>>> ctBulkLoadTool.java:183) >>>> >>>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70) >>>> >>>> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84) >>>> >>>> at org.apache.phoenix.mapreduce.CsvBulkLoadTool.main(CsvBulkLoa >>>> dTool.java:101) >>>> >>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >>>> >>>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAcce >>>> ssorImpl.java:62) >>>> >>>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe >>>> thodAccessorImpl.java:43) >>>> >>>> at java.lang.reflect.Method.invoke(Method.java:498) >>>> >>>> at org.apache.hadoop.util.RunJar.run(RunJar.java:221) >>>> >>>> at org.apache.hadoop.util.RunJar.main(RunJar.java:136) >>>> >>>> >>>> >>>> >>>> On Wed, Sep 6, 2017 at 4:16 PM, Sergey Soldatov < >>>> [email protected]> wrote: >>>> >>>>> Do you have more details on the version of Phoenix/HBase you are using >>>>> as well as how it hangs (Exceptions/messages that may help to understand >>>>> the problem)? >>>>> >>>>> Thanks, >>>>> Sergey >>>>> >>>>> On Wed, Sep 6, 2017 at 1:13 PM, Sriram Nookala <[email protected]> >>>>> wrote: >>>>> >>>>>> I'm trying to load a 3.5G file with 60 million rows using >>>>>> CsvBulkLoadTool. It hangs while loading HFiles. This runs successfully >>>>>> if I >>>>>> split this into 2 files, but I'd like to avoid doing that. This is on >>>>>> Amazon EMR, is this an issue due to disk space or memory. I have a single >>>>>> master and 2 region server configuration with 16 GB memory on each node. >>>>>> >>>>> >>>>> >>>> >>> >> >
