https://stackoverflow.com/questions/66060487/valueerror-numpy-ndarray-size-changed-may-indicate-binary-incompatibility-exp
fre. 6. jan. 2023, 16:01 skrev Oliver Ruebenacker < oliv...@broadinstitute.org>: > > Hello, > > I'm trying to install SciPy using a bootstrap script and then use it to > calculate a new field in a dataframe, running on AWS EMR. > > Although the SciPy website states that only NumPy is needed, when I > tried to install SciPy using pip, pip kept failing, complaining about > missing software, until I ended up with this bootstrap script: > > > > > > > *sudo yum install -y python3-develsudo pip3 install -U Cythonsudo pip3 > install -U pybind11sudo pip3 install -U pythransudo pip3 install -U > numpysudo pip3 install -U scipy* > > At this point, the bootstrap seems to be successful, but then at this > line: > > *from scipy.stats import norm* > > I get the following error: > > *ValueError: numpy.ndarray size changed, may indicate binary > incompatibility. Expected 88 from C header, got 80 from PyObject* > > Any advice on how to proceed? Thanks! > > Best, Oliver > > -- > Oliver Ruebenacker, Ph.D. (he) > Senior Software Engineer, Knowledge Portal Network <http://kp4cd.org/>, > Flannick > Lab <http://www.flannicklab.org/>, Broad Institute > <http://www.broadinstitute.org/> >
