https://stackoverflow.com/questions/66060487/valueerror-numpy-ndarray-size-changed-may-indicate-binary-incompatibility-exp
view my Linkedin profile <https://www.linkedin.com/in/mich-talebzadeh-ph-d-5205b2/> https://en.everybodywiki.com/Mich_Talebzadeh *Disclaimer:* Use it at your own risk. Any and all responsibility for any loss, damage or destruction of data or any other property which may arise from relying on this email's technical content is explicitly disclaimed. The author will in no case be liable for any monetary damages arising from such loss, damage or destruction. On Fri, 6 Jan 2023 at 17:13, Oliver Ruebenacker <oliv...@broadinstitute.org> wrote: > Thank you for the link. I already tried most of what was suggested there, > but without success. > > On Fri, Jan 6, 2023 at 11:35 AM Bjørn Jørgensen <bjornjorgen...@gmail.com> > wrote: > >> >> >> >> https://stackoverflow.com/questions/66060487/valueerror-numpy-ndarray-size-changed-may-indicate-binary-incompatibility-exp >> >> >> >> >> fre. 6. jan. 2023, 16:01 skrev Oliver Ruebenacker < >> oliv...@broadinstitute.org>: >> >>> >>> Hello, >>> >>> I'm trying to install SciPy using a bootstrap script and then use it >>> to calculate a new field in a dataframe, running on AWS EMR. >>> >>> Although the SciPy website states that only NumPy is needed, when I >>> tried to install SciPy using pip, pip kept failing, complaining about >>> missing software, until I ended up with this bootstrap script: >>> >>> >>> >>> >>> >>> >>> *sudo yum install -y python3-develsudo pip3 install -U Cythonsudo pip3 >>> install -U pybind11sudo pip3 install -U pythransudo pip3 install -U >>> numpysudo pip3 install -U scipy* >>> >>> At this point, the bootstrap seems to be successful, but then at this >>> line: >>> >>> *from scipy.stats import norm* >>> >>> I get the following error: >>> >>> *ValueError: numpy.ndarray size changed, may indicate binary >>> incompatibility. Expected 88 from C header, got 80 from PyObject* >>> >>> Any advice on how to proceed? Thanks! >>> >>> Best, Oliver >>> >>> -- >>> Oliver Ruebenacker, Ph.D. (he) >>> Senior Software Engineer, Knowledge Portal Network <http://kp4cd.org/>, >>> Flannick >>> Lab <http://www.flannicklab.org/>, Broad Institute >>> <http://www.broadinstitute.org/> >>> >> > > -- > Oliver Ruebenacker, Ph.D. (he) > Senior Software Engineer, Knowledge Portal Network <http://kp4cd.org/>, > Flannick > Lab <http://www.flannicklab.org/>, Broad Institute > <http://www.broadinstitute.org/> >
