Thank you for the link. I already tried most of what was suggested there, but without success.
On Fri, Jan 6, 2023 at 11:35 AM Bjørn Jørgensen <bjornjorgen...@gmail.com> wrote: > > > > https://stackoverflow.com/questions/66060487/valueerror-numpy-ndarray-size-changed-may-indicate-binary-incompatibility-exp > > > > > fre. 6. jan. 2023, 16:01 skrev Oliver Ruebenacker < > oliv...@broadinstitute.org>: > >> >> Hello, >> >> I'm trying to install SciPy using a bootstrap script and then use it to >> calculate a new field in a dataframe, running on AWS EMR. >> >> Although the SciPy website states that only NumPy is needed, when I >> tried to install SciPy using pip, pip kept failing, complaining about >> missing software, until I ended up with this bootstrap script: >> >> >> >> >> >> >> *sudo yum install -y python3-develsudo pip3 install -U Cythonsudo pip3 >> install -U pybind11sudo pip3 install -U pythransudo pip3 install -U >> numpysudo pip3 install -U scipy* >> >> At this point, the bootstrap seems to be successful, but then at this >> line: >> >> *from scipy.stats import norm* >> >> I get the following error: >> >> *ValueError: numpy.ndarray size changed, may indicate binary >> incompatibility. Expected 88 from C header, got 80 from PyObject* >> >> Any advice on how to proceed? Thanks! >> >> Best, Oliver >> >> -- >> Oliver Ruebenacker, Ph.D. (he) >> Senior Software Engineer, Knowledge Portal Network <http://kp4cd.org/>, >> Flannick >> Lab <http://www.flannicklab.org/>, Broad Institute >> <http://www.broadinstitute.org/> >> > -- Oliver Ruebenacker, Ph.D. (he) Senior Software Engineer, Knowledge Portal Network <http://kp4cd.org/>, Flannick Lab <http://www.flannicklab.org/>, Broad Institute <http://www.broadinstitute.org/>
