I was able to install that, and I’m not getting the NullPointerException. The example annotator still runs successfully, but now I get ---------------------------------------------------------------------------
Attempting to deploy descriptors/Deploy_MeetingAnnotator.xml ... Waiting for Uima C++ service to connect... Waiting for Uima C++ service to connect... Waiting for Uima C++ service to report init status... deployCppService.cpp91 Start receiving messages Startinging GetMetaData instance Starting Annotator instance 0 deployCppService.cpp UIMA C++ Service MeetingAnnotator at tcp://localhost:61616 Ready to process... Uima C++ service at MeetingAnnotator Ready to process... UIMA AS Service Initialization Complete ........Completed 8 documents; 17165 characters Time Elapsed : 3705 ms 0 8 apr_socket_recv command=SHUTDOWN deployCppService.cpp Shutdown started. Stopping GetMetaData instance Stopping Annotator instance 0 deployCppService.cpp Shutdown done. UimacppServiceManagement service reports shutdown DONE UimacppShutdownHook sending quiesce message java.net.SocketException: Socket is closed at java.net.Socket.getInputStream(Socket.java:903) at org.apache.uima.aae.controller.UimacppServiceManagement.quiesceAndStop(Uima cppServiceManagement.java:88) at org.apache.uima.aae.controller.UimacppServiceManagement.quiesceAndShutdown( UimacppServiceManagement.java:397) at org.apache.uima.aae.controller.UimacppShutdownHook.run(UimacppServiceContro ller.java:1105) UimacppShutdownHook destroy C++ process ――――― I’ve attached the uima.log On 9/22/16, 3:54 PM, "Jaroslaw Cwiklik" <uim...@gmail.com> wrote: >David, I've deployed uima-as 2.9.0-SNAPSHOT here: > >https://urldefense.proofpoint.com/v2/url?u=https-3A__repository.apache.org >_content_repositories_snapshots_org_apache_uima_uima-2Das_2.9.0-2DSNAPSHOT >_&d=DQIFaQ&c=3XrKki35ZWuh8X2qbeRISQ&r=BYS7q6K6Famz8NiMJzvOgYA-WQSvBt9z6TEb >aT3nnNM&m=NnQy2jfAk4Dyg-uijgdjHHbg6pxfdvwDkCn3166fVc8&s=y7GSTfzyEzhkYgFGy1 >vLLmDJ82il_hzMP7Y4LQjuBPg&e= > >there is a binary tarball (tar.gz) in there. > >This is a trunk level uima-as code for the upcoming 2.9.0 uima-as release. >It has not been thoroughly >tested or vetted yet. It has some fixes and improvements since 2.8.1. It >includes a new AMQ broker >version 5.14.0. It also has a fix for the problem you've reported. > >-jerry > > >On Thu, Sep 22, 2016 at 3:15 PM, Jaroslaw Cwiklik <uim...@gmail.com> >wrote: > >> Another possibility is to deploy a snapshot in a public maven repo. >> Hopefully you can get the binary tarball >> onto your machines somehow. I will to do that know and let you know >>where >> to get this. >> >> -jerry >> >> On Thu, Sep 22, 2016 at 3:01 PM, David Fox <david....@humedica.com> >>wrote: >> >>> Building from svn on our linux machines is a bit tricky, because they >>>are >>> cut off from the internet by a firewall, and maven install wants >>>internet >>> access to download dependencies. It looks like there are workarounds >>>for >>> that >>> >>>(https://urldefense.proofpoint.com/v2/url?u=http-3A__stackoverflow.com_q >>>uestions_7233328_how-2Ddo-2Di-2Dconfigu&d=DQIFaQ&c=3XrKki35ZWuh8X2qbeRIS >>>Q&r=BYS7q6K6Famz8NiMJzvOgYA-WQSvBt9z6TEbaT3nnNM&m=NnQy2jfAk4Dyg-uijgdjHH >>>bg6pxfdvwDkCn3166fVc8&s=sk4NjHKmY1SCj4WAEH0A59C50xulbEthh1b5K5egbv0&e= >>> re-maven-for-of >>> fline-development >>> >>><https://urldefense.proofpoint.com/v2/url?u=http-3A__stackoverflow.com_q >>>uestions_7233328_how-2Ddo-2Di-2Dconfigure-2Dmaven-2Dfor-2Doffline-2Ddeve >>>lopment&d=DQIFaQ&c=3XrKki35ZWuh8X2qbeRISQ&r=BYS7q6K6Famz8NiMJzvOgYA-WQSv >>>Bt9z6TEbaT3nnNM&m=NnQy2jfAk4Dyg-uijgdjHHbg6pxfdvwDkCn3166fVc8&s=pMHCokJs >>>jTNk_XvWxddISyww6QBt65VZmeVGKLTLK94&e= > >>> suggests Artifactory), but it may take a day or two >>> before I can get everything set up. >>> >>> I could build it on my dev machine (OS X), but with the binary >>>install, I >>> wasn’t able to get the sample UIMA C++ code to build on Mac OS X. (My >>> eventual plan is to get linux on my dev machine via virtual box, but >>>that >>> means more software to install…) >>> >>> So anyway, I’ll try to get this working so I can build from svn before >>>the >>> fix, reproduce the problem, and then update and verify the fix. >>> >>> Thanks, >>> David >>> >>> On 9/22/16, 1:23 PM, "Jaroslaw Cwiklik" <uim...@gmail.com> wrote: >>> >>> >I think I see the bug. Do you know how to build uima-as from svn? >>> > >>> >https://urldefense.proofpoint.com/v2/url?u=https-3A__uima. >>> apache.org_build >>> >ing-2Duima.html&d=DQIFaQ&c=3XrKki35ZWuh8X2qbeRISQ&r=BYS7q6K >>> 6Famz8NiMJzvOgY >>> >A-WQSvBt9z6TEbaT3nnNM&m=9Hf7csP-1jIlxx_vgB3QA47yh0w3i1- >>> XbVER8KQmhT8&s=Gin5 >>> >am-lATmbl6WQFmZrKwjxKa3tiL1qz1ykFh0cdWI&e= >>> > >>> >I will fix this shortly in the svn trunk. The next release of uima-as >>> >(2.9.0) is in the >>> >works. I will get a release candidate out hopefully next week. >>> > >>> >-jerry >>> > >>> >On Thu, Sep 22, 2016 at 12:08 PM, David Fox <david....@humedica.com> >>> >wrote: >>> > >>> >> Thanks for the quick response >>> >> >>> >> Yes, it occurs every time, at the same line in RunRemoteAsyncAE and >>> >> org.apache.uima.adapter.jms.client.BaseUIMAAsynchronousEngine_ >>> >> impl.undeploy(BaseUIMAAsynchronousEngine_impl.java:964) >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> On 9/22/16, 11:15 AM, "Jaroslaw Cwiklik" <uim...@gmail.com> wrote: >>> >> >>> >> >This warning >>> >> > >>> >> >WARN Transport - Transport Connection to: >>>tcp:// >>> >> >127.0.0.1:56261 failed: java.io.EOFException >>> >> > >>> >> >is from brokers log or console I suspect. It just means that the >>> broker >>> >> >lost a connection to a client. Looks like the client >>> >> >went away without closing a connection. This is probably a >>>side-effect >>> >>of >>> >> >NPE. >>> >> > >>> >> >Is the NPE repeatable? Does it happen each time you run this test? >>> >>Looking >>> >> >for a hint if there is a race >>> >> >condition in the UIMA-AS code. >>> >> > >>> >> > >>> >> > >>> >> >On Thu, Sep 22, 2016 at 10:54 AM, David Fox >>><david....@humedica.com> >>> >> >wrote: >>> >> > >>> >> >> I¹m using the UIMA C++ framework 2.4.0 (32-bit) on linux (CentOS >>> >>6.5), >>> >> >>and >>> >> >> following the instructions >>> >> >>https://urldefense.proofpoint.com/v2/url?u=https- >>> >> 3A__uima.apache.org_d_&d >>> >> >>=DQIFaQ&c=3XrKki35ZWuh8X2qbeRISQ&r=BYS7q6K6Famz8NiMJzvOgYA- >>> >> WQSvBt9z6TEbaT >>> >> >>3nnNM&m=dFZSJENJkyCDLeCQuBn89fBrTrsdKh4RIWwwPV7r0o8&s=CaIoLZ_7Je- >>> >> TYsr0ZIP >>> >> >>xs98mHRestzC4RtgVSp7kJaY&e= >>> >> >> uimacpp-2.4.0/docs/overview_and_setup.html. I¹ve successfully >>> built >>> >> >> DaveDetector and run it with the standalone C++ pipeline >>>(runAECpp) >>> >>and >>> >> >> within a Java pipeline via JNI. I¹ve now installed UIMA AS >>>2.8.1 so >>> >>I >>> >> >>can >>> >> >> follow the instructions under 2.3 Testing Interoperability with >>>UIMA >>> >>AS >>> >> >> >>> >> >> >>> >> >> cd $UIMACPP_HOME/examples/tutorial >>> >> >> runRemoteAsyncAE.sh tcp://localhost:61616 MeetingAnnotator \ >>> >> >> -d descriptors/Deploy_MeetingAnnotator.xml >>> >> >> >>> >> >> >>> >> >> I get a NullPointerException and a transport warning about a >>> >> >> java.io.EOFException >>> >> >> >>> >> >> >>> >> >> runRemoteAsyncAE.sh tcp://localhost:61616 MeetingAnnotator -d >>> >> >> descriptors/Deploy_MeetingAnnotator.xml -o `pwd`/out >>> >> >> >>> >> >> Attempting to deploy descriptors/Deploy_MeetingAnnotator.xml ... >>> >> >> >>> >> >> Waiting for Uima C++ service to connect... >>> >> >> >>> >> >> Waiting for Uima C++ service to connect... >>> >> >> >>> >> >> Waiting for Uima C++ service to report init status... >>> >> >> >>> >> >> deployCppService.cpp91 Start receiving messages >>> >> >> >>> >> >> >>> >> >> Startinging GetMetaData instance >>> >> >> >>> >> >> >>> >> >> Starting Annotator instance 0 >>> >> >> >>> >> >> >>> >> >> deployCppService.cpp UIMA C++ Service MeetingAnnotator at >>> >> >> tcp://localhost:61616 Ready to process... >>> >> >> >>> >> >> >>> >> >> Uima C++ service at MeetingAnnotator Ready to process... >>> >> >> >>> >> >> UIMA AS Service Initialization Complete >>> >> >> >>> >> >> .Completed 1 documents >>> >> >> >>> >> >> Time Elapsed : 2184 ms >>> >> >> >>> >> >> java.lang.NullPointerException >>> >> >> >>> >> >> at >>> >> >>org.apache.uima.adapter.jms.client.BaseUIMAAsynchronousEngine_ >>> >> >> impl.undeploy(BaseUIMAAsynchronousEngine_impl.java:964) >>> >> >> >>> >> >> at >>> >> >>org.apache.uima.adapter.jms.client.BaseUIMAAsynchronousEngine_ >>> >> >> impl.undeploy(BaseUIMAAsynchronousEngine_impl.java:906) >>> >> >> >>> >> >> at org.apache.uima.examples.as.RunRemoteAsyncAE.run( >>> >> >> RunRemoteAsyncAE.java:260) >>> >> >> >>> >> >> at org.apache.uima.examples.as.RunRemoteAsyncAE.main( >>> >> >> RunRemoteAsyncAE.java:314) >>> >> >> >>> >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native >>> >>Method) >>> >> >> >>> >> >> at sun.reflect.NativeMethodAccessorImpl.invoke( >>> >> >> NativeMethodAccessorImpl.java:62) >>> >> >> >>> >> >> at sun.reflect.DelegatingMethodAccessorImpl.invoke( >>> >> >> DelegatingMethodAccessorImpl.java:43) >>> >> >> >>> >> >> at java.lang.reflect.Method.invoke(Method.java:497) >>> >> >> >>> >> >> at org.apache.uima.bootstrap.UimaBootstrap.main( >>> >> >> UimaBootstrap.java:87) >>> >> >> >>> >> >> WARN Transport - Transport Connection to: >>> >>tcp:// >>> >> >> 127.0.0.1:56221 failed: java.io.EOFException >>> >> >> >>> >> >> I'm >>> >> >> I can also run with a collection reader: >>> >> >> >>> >> >> >>> >> >> runRemoteAsyncAE.sh tcp://localhost:61616 MeetingAnnotator -d >>> >> >> descriptors/Deploy_MeetingAnnotator.xml -o `pwd`/out -c >>> >> >> /misc/NLP/dfox/scratch/uima/apache-uima-as-2.8.1/examples/ >>> >> >> descriptors/collection_reader/FileSystemCollectionReader.mine.xml >>> >> >> >>> >> >> (where the modified collection reader points to >>> >> >>$UIMA_HOME/examples/data) >>> >> >> in which case I get ³Completed 8 documents², and xmi output for >>>each >>> >>in >>> >> >>the >>> >> >> out/ directory, but still get the same exception and warning. >>>Based >>> >>on >>> >> >> that (plus looking at the RunRemoteAsyncAE java source), it looks >>> >>like >>> >> >>my >>> >> >> analysis engine is running fine, but then hitting some problem >>>when >>> >> >> RunRemoteAsyncAE tries to undeploy the C++ annotator. >>> >> >> >>> >> >> I¹m trying to figure out if this is something I should worry >>>about >>> >> >> (especially if it reflects a problem with running UIMA C++ 2.4 >>>and >>> >>UIMA >>> >> >>AS >>> >> >> 2.8.1), or if it is normal or harmless. >>> >> >> >>> >> >> When I run the similar test with one of the Java-only UIMA AS >>> >>samples: >>> >> >> >>> >> >> >>> >> >> runRemoteAsyncAE.sh tcp://localhost:61616 >>>MeetingDetectorTaeQueue -d >>> >> >> deploy/as/Deploy_MeetingDetectorTAE.xml -c >>> >> >>descriptors/collection_reader/ >>> >> >> FileSystemCollectionReader.mine.xml >>> >> >> >>> >> >> I still get the transport warning >>> >> >> >>> >> >> >>> >> >> WARN Transport - Transport Connection to: >>> >>tcp:// >>> >> >> 127.0.0.1:56261 failed: java.io.EOFException >>> >> >> >>> >> >> but not the NullPointerException >>> >> >> >>> >> >> Thanks, >>> >> >> David >>> >> >> >>> >> >> >>> >> >> >>> >> >> >>> >> >> >>> >> >> >>> >> >>> >> >>> >>> >>