On 18 May 2012 20:10, Rayson Ho <[email protected]> wrote: > If you are looking for the tight SSH integration created by Ron & I > back in 2005, you may want to wait for the announcement next week for > the new features of GE 2011.11 update 1 - we have a much better > solution for this on Linux. I assume you are referring to your cgroups stuff here. Some of us are still using Linux versions without cgroups (like Scientific Linux 5).
William > > We are going to release update 1 (minor release with features) in June. > > Rayson > > > > On Fri, May 18, 2012 at 3:03 PM, Brian McNally <[email protected]> wrote: >> Thanks all, I've made a lot more progress on building OGS thanks to some of >> the tips here. I'm trying to build OGS with tight SSH integration and am >> getting this error: >> >> $ ./aimk -parallel 2 -spool-berkeleydb -no-dump -only-depend -tight-ssh >> Warning: >> Setting $JAVA_HOME to "/usr" causes problems on some systems, >> because the associated include path will be "/usr/include", >> which is a reserved system include path. >> >> Building in directory: /tmp/GE2011.11/source >> making in LINUXX64/ for LINUXX64 at host buildhost.local >> _________S_G_E__D_E_P_E_N_D_______________ >> make: Nothing to be done for `all'. >> _________3_r_d_p_a_r_t_y__SSH_____________ >> /tmp/GE2011.11/source/3rdparty/openssh: No such file or directory. >> >> It looks like that directory doesn't exist. Is the -tight-ssh option broken? >> >> -- >> Brian McNally >> System Administrator, Genome Sciences >> (206) 543-7363 >> >> >> On 05/11/2012 05:32 PM, Chi Chan wrote: >>> >>> I compiled GE 2011.11 on RHEL 5.8, and I installed a number of >>> dependencies: >>> >>> $ yum install pam-devel ncurses ncurses-devel openssl-devel >>> >>> And if you need the qmon UI, you will need to yum install a few more X >>> libraries like OpenMOTIF, libXpm. >>> >>> --Chi >>> >>> >>> On Fri, May 11, 2012 at 8:14 PM, Brian McNally<[email protected]> wrote: >>>> >>>> Running RHEL 6.2 and following the instructions for no dependencies here: >>>> >>>> http://gridscheduler.sourceforge.net/CompileGridEngineSource.html >>>> >>>> My build fails on: >>>> >>>> gcc -DSGE_ARCH_STRING=\"linux-x64\" -O3 -Wall -Wstrict-prototypes >>>> -DUSE_POLL >>>> -DLINUX -DLINUXX64 -DLINUXX64 -D_GNU_SOURCE -DGETHOSTBYNAME_R6 >>>> -DGETHOSTBYADDR_R8 -DHAS_VSNPRINTF -I/build/berkeleydb/include/ >>>> -DTARGET_64BIT -DSPOOLING_classic -Wno-strict-aliasing -DNO_JNI >>>> -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ -D__SGE_NO_USERMAPPING__ >>>> -DTHREADBINDING -DHWLOC -I../common -I../libs -I../libs/uti >>>> -I../libs/juti >>>> -I../libs/gdi -I../libs/japi -I../libs/sgeobj -I../libs/cull >>>> -I../libs/rmon >>>> -I../libs/comm -I../libs/comm/lists -I../libs/sched -I../libs/evc >>>> -I../libs/evm -I../libs/mir -I../libs/lck -I../daemons/common >>>> -I../daemons/qmaster -I../daemons/execd -I../daemons/schedd >>>> -I../clients/common -I. >>>> >>>> -I/net/gs/vol2/home/bmcnally/build/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/include/ >>>> >>>> -I/home/user/build/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/LINUXX64/include >>>> -c ../utilbin/authuser.c -o authuser.o >>>> ../utilbin/authuser.c:72:31: error: security/pam_appl.h: No such file or >>>> directory >>>> ../utilbin/authuser.c:402: warning: ‘struct pam_response’ declared inside >>>> parameter list >>>> ../utilbin/authuser.c:402: warning: its scope is only this definition or >>>> declaration, which is probably not what you want >>>> ../utilbin/authuser.c:402: warning: ‘struct pam_message’ declared inside >>>> parameter list >>>> ../utilbin/authuser.c: In function ‘do_pam_authenticate’: >>>> ../utilbin/authuser.c:418: error: ‘pam_handle_t’ undeclared (first use in >>>> this function) >>>> ../utilbin/authuser.c:418: error: (Each undeclared identifier is reported >>>> only once >>>> ../utilbin/authuser.c:418: error: for each function it appears in.) >>>> ../utilbin/authuser.c:418: error: ‘pamh’ undeclared (first use in this >>>> function) >>>> ../utilbin/authuser.c:419: error: storage size of ‘pamconv’ isn’t known >>>> ../utilbin/authuser.c:434: warning: implicit declaration of function >>>> ‘pam_start’ >>>> ../utilbin/authuser.c:435: error: ‘PAM_SUCCESS’ undeclared (first use in >>>> this function) >>>> ../utilbin/authuser.c:439: warning: implicit declaration of function >>>> ‘pam_authenticate’ >>>> ../utilbin/authuser.c:439: error: ‘PAM_SILENT’ undeclared (first use in >>>> this >>>> function) >>>> ../utilbin/authuser.c:446: warning: implicit declaration of function >>>> ‘pam_acct_mgmt’ >>>> ../utilbin/authuser.c:455: warning: implicit declaration of function >>>> ‘pam_strerror’ >>>> ../utilbin/authuser.c:461: warning: implicit declaration of function >>>> ‘pam_end’ >>>> ../utilbin/authuser.c:461: error: ‘PAM_ABORT’ undeclared (first use in >>>> this >>>> function) >>>> ../utilbin/authuser.c:419: warning: unused variable ‘pamconv’ >>>> ../utilbin/authuser.c: At top level: >>>> ../utilbin/authuser.c:478: warning: ‘struct pam_response’ declared inside >>>> parameter list >>>> ../utilbin/authuser.c:478: warning: ‘struct pam_message’ declared inside >>>> parameter list >>>> ../utilbin/authuser.c:477: error: conflicting types for ‘login_conv’ >>>> ../utilbin/authuser.c:401: note: previous declaration of ‘login_conv’ was >>>> here >>>> ../utilbin/authuser.c: In function ‘login_conv’: >>>> ../utilbin/authuser.c:489: error: ‘PAM_CONV_ERR’ undeclared (first use in >>>> this function) >>>> ../utilbin/authuser.c:493: error: invalid application of ‘sizeof’ to >>>> incomplete type ‘struct pam_response’ >>>> ../utilbin/authuser.c:498: error: ‘PAM_BUF_ERR’ undeclared (first use in >>>> this function) >>>> ../utilbin/authuser.c:511: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:512: error: ‘PAM_PROMPT_ECHO_OFF’ undeclared (first >>>> use in this function) >>>> ../utilbin/authuser.c:514: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:514: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:516: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:516: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:528: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:528: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:529: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:529: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:548: error: ‘PAM_PROMPT_ECHO_ON’ undeclared (first >>>> use >>>> in this function) >>>> ../utilbin/authuser.c:560: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:560: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:561: error: invalid use of undefined type ‘struct >>>> pam_response’ >>>> ../utilbin/authuser.c:561: error: dereferencing pointer to incomplete >>>> type >>>> ../utilbin/authuser.c:572: error: ‘PAM_ERROR_MSG’ undeclared (first use >>>> in >>>> this function) >>>> ../utilbin/authuser.c:573: error: ‘PAM_TEXT_INFO’ undeclared (first use >>>> in >>>> this function) >>>> ../utilbin/authuser.c:591: error: ‘PAM_SUCCESS’ undeclared (first use in >>>> this function) >>>> >>>> Any ideas? I'm currently evaluating alternatives to SGE moving forward. I >>>> think OGS would be a good option if I can get it to build. >>>> >>>> Thanks >>>> >>>> -- >>>> Brian McNally >>>> _______________________________________________ >>>> users mailing list >>>> [email protected] >>>> https://gridengine.org/mailman/listinfo/users >> >> _______________________________________________ >> users mailing list >> [email protected] >> https://gridengine.org/mailman/listinfo/users > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users > > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
