---------- Forwarded message ---------- From: Abhinav Mittal <[email protected]> Date: Wed, Mar 19, 2014 at 9:04 PM Subject: Re: [gridengine users] your job is not allowed to run in any queue To: Reuti <[email protected]>
YES abhnav and abhinav are different! On Wed, Mar 19, 2014 at 9:00 PM, Reuti <[email protected]> wrote: > Am 19.03.2014 um 16:28 schrieb Abhinav Mittal: > >>>>>>> <snip> >>>>>>> hostlist abhnav > > Is there an "i" missing? > > -- Reuti > > >>>>>>> seq_no 0 >>>>>>> load_thresholds np_load_avg=1.75 >>>>>>> suspend_thresholds NONE >>>>>>> nsuspend 1 >>>>>>> suspend_interval 00:05:00 >>>>>>> priority 0 >>>>>>> min_cpu_interval 00:05:00 >>>>>>> processors 2 >>>>>> >>>>>> Most likely this should be set to UNDEFINED unless you are running one >>>>>> of the supported OS for this option. >>>>>> >>>>>> Please have a look at `man queue_conf` for an explanation. >>>>>> >>>>>> -- Reuti >>>>>> >>>>>> >>>>>>> qtype BATCH INTERACTIVE >>>>>>> ckpt_list NONE >>>>>>> pe_list make >>>>>>> rerun FALSE >>>>>>> slots 1 >>>>>>> tmpdir /tmp >>>>>>> shell /bin/csh >>>>>>> prolog NONE >>>>>>> epilog NONE >>>>>>> shell_start_mode posix_compliant >>>>>>> starter_method NONE >>>>>>> suspend_method NONE >>>>>>> resume_method NONE >>>>>>> terminate_method NONE >>>>>>> notify 00:00:60 >>>>>>> owner_list NONE >>>>>>> user_lists arusers >>>>>>> xuser_lists NONE >>>>>>> subordinate_list NONE >>>>>>> complex_values NONE >>>>>>> projects NONE >>>>>>> xprojects NONE >>>>>>> calendar NONE >>>>>>> initial_state default >>>>>>> s_rt INFINITY >>>>>>> h_rt INFINITY >>>>>>> s_cpu INFINITY >>>>>>> h_cpu INFINITY >>>>>>> s_fsize INFINITY >>>>>>> h_fsize INFINITY >>>>>>> s_data INFINITY >>>>>>> h_data INFINITY >>>>>>> s_stack INFINITY >>>>>>> h_stack INFINITY >>>>>>> s_core INFINITY >>>>>>> h_core INFINITY >>>>>>> s_rss INFINITY >>>>>>> h_rss INFINITY >>>>>>> s_vmem INFINITY >>>>>>> h_vmem INFINITY >>>>>>> >>>>>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]> >>>>>>> wrote: >>>>>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: >>>>>>>> >>>>>>>>> -------------------------------------------------------------------------------------------------------------------------------- >>>>>>>>> abhinav@abhnav:~$ qconf -sel >>>>>>>>> abhnav >>>>>>>>> abhinav@abhnav:~$ qconf -sql >>>>>>>>> New >>>>>>>>> abhinav@abhnav:~$ qconf -sconf >>>>>>>>> #global: >>>>>>>>> execd_spool_dir /var/spool/gridengine/execd >>>>>>>>> mailer /usr/bin/mail >>>>>>>>> xterm /usr/bin/xterm >>>>>>>>> load_sensor none >>>>>>>>> prolog none >>>>>>>>> epilog none >>>>>>>>> shell_start_mode posix_compliant >>>>>>>>> login_shells bash,sh,ksh,csh,tcsh >>>>>>>>> min_uid 0 >>>>>>>>> min_gid 0 >>>>>>>>> user_lists none >>>>>>>>> xuser_lists none >>>>>>>>> projects none >>>>>>>>> xprojects none >>>>>>>>> enforce_project false >>>>>>>>> enforce_user auto >>>>>>>>> load_report_time 00:00:40 >>>>>>>>> max_unheard 00:05:00 >>>>>>>>> reschedule_unknown 00:00:00 >>>>>>>>> loglevel log_warning >>>>>>>> >>>>>>>> This I suggest to change to: >>>>>>>> >>>>>>>> loglevel log_info >>>>>>>> >>>>>>>> >>>>>>>>> administrator_mail root >>>>>>>>> set_token_cmd none >>>>>>>>> pag_cmd none >>>>>>>>> token_extend_time none >>>>>>>>> shepherd_cmd none >>>>>>>>> qmaster_params none >>>>>>>>> execd_params none >>>>>>>>> reporting_params accounting=true reporting=false \ >>>>>>>>> flush_time=00:00:15 joblog=false >>>>>>>>> sharelog=00:00:00 >>>>>>>>> finished_jobs 100 >>>>>>>>> gid_range 65400-65500 >>>>>>>>> max_aj_instances 2000 >>>>>>>>> max_aj_tasks 75000 >>>>>>>>> max_u_jobs 0 >>>>>>>>> max_jobs 0 >>>>>>>>> auto_user_oticket 0 >>>>>>>>> auto_user_fshare 0 >>>>>>>>> auto_user_default_project none >>>>>>>>> auto_user_delete_time 86400 >>>>>>>>> delegated_file_staging false >>>>>>>>> reprioritize 0 >>>>>>>>> rlogin_daemon /usr/sbin/sshd -i >>>>>>>>> rlogin_command /usr/bin/ssh >>>>>>>>> qlogin_daemon /usr/sbin/sshd -i >>>>>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper >>>>>>>>> rsh_daemon /usr/sbin/sshd -i >>>>>>>>> rsh_command /usr/bin/ssh >>>>>>>> >>>>>>>> Did you set this up? The default is to use the builtin tools for the >>>>>>>> commands above. >>>>>>>> >>>>>>>> >>>>>>>>> jsv_url none >>>>>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >>>>>>>> >>>>>>>> Fine. >>>>>>>> >>>>>>>> >>>>>>>>> abhinav@abhnav:~$ qstat -f >>>>>>>>> queuename qtype resv/used/tot. load_avg arch >>>>>>>>> states >>>>>>>>> --------------------------------------------------------------------------------- >>>>>>>>> New@abhnav BIP 0/0/1 0.68 >>>>>>>>> lx26-amd64 >>>>>>>>> >>>>>>>>> ############################################################################ >>>>>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING >>>>>>>>> JOBS >>>>>>>>> ############################################################################ >>>>>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 >>>>>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 >>>>>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 >>>>>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 >>>>>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 >>>>>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 >>>>>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 >>>>>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 >>>>>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 >>>>>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 >>>>>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 >>>>>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 >>>>>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 >>>>>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 >>>>>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 >>>>>>>> >>>>>>>> So, what does the queue look like: >>>>>>>> >>>>>>>> $ qconf -sq New >>>>>>>> >>>>>>>> -- Reuti >>>>>>>> >>>>>>>> >>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>> abhnav >>>>>>>>> >>>>>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]> >>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >>>>>>>>>> >>>>>>>>>>> Not working >>>>>>>>>>> >>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>> abhnav >>>>>>>>>>> localhost >>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>> abhnav >>>>>>>>>>> abhinav@abhnav:~$ qsub script.sh >>>>>>>>>>> Unable to run job: warning: abhinav your job is not allowed to run >>>>>>>>>>> in any queue >>>>>>>>>>> Your job 18 ("script.sh") has been submitted. >>>>>>>>>>> Exiting. >>>>>>>>>>> >>>>>>>>>>> Same for qsub -b y as well >>>>>>>>>>> >>>>>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti <[email protected]> >>>>>>>>>>> wrote: >>>>>>>>>>>> Hi, >>>>>>>>>>>> >>>>>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>>>>>>>>>> >>>>>>>>>>>>> I am trying to run a software called >>>>>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>>>>>>>>>> >>>>>>>>>>>> Before looking into any application specific problems: is a simple >>>>>>>>>>>> script echo'ing "Hello World" working? Can you submit a binary >>>>>>>>>>>> with `qsub -b y hostname` too? >>>>>>>>>>>> >>>>>>>>>>>> -- Reuti >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> and getting an error "your job is not allowed to run in any que". >>>>>>>>>>>>> submit host : localhost , abhnav >>>>>>>>>>>>> hostname : abhnav >>>>>>>>>>>>> Still I am getting this error >>>>>>>>>>>>> Please help. >>>>>>>>>>>>> >>>>>>>>>>>>> ----------------------------------------------------------------------------------------------------------------- >>>>>>>>>>>>> >>>>>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata >>>>>>>>>>>>> traindir >>>>>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday March >>>>>>>>>>>>> 19 >>>>>>>>>>>>> 2014, 16:06:01 IST ____ >>>>>>>>>>>>> Traceback (most recent call last): >>>>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in >>>>>>>>>>>>> <module> >>>>>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')() >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 3592, in main >>>>>>>>>>>>> return runner() >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 3429, in __call__ >>>>>>>>>>>>> self.run(*args, **kwargs) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 3407, in run >>>>>>>>>>>>> self.run_train() >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 3038, in run_train >>>>>>>>>>>>> instance_params = run_train_func(num_segs_range) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 3056, in run_train_singlethread >>>>>>>>>>>>> res = [self.run_train_instance()] >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 2937, in run_train_instance >>>>>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 2899, in run_train_round >>>>>>>>>>>>> round_index, **kwargs) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>> line 2770, in queue_train_parallel >>>>>>>>>>>>> res.queue(restartable_job) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>> line 174, in queue >>>>>>>>>>>>> self._queue_unconditional(restartable_job) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>> line 164, in _queue_unconditional >>>>>>>>>>>>> jobid = restartable_job.run() >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>> line 116, in run >>>>>>>>>>>>> res = self.session.runJob(job_template) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>>>>>>>>>> line 314, in runJob >>>>>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>>>>>>>>>> line 299, in c >>>>>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>>>>>>>>>> File >>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>>>>>>>>>> line 151, in error_check >>>>>>>>>>>>> raise _ERRORS[code - 1](error_string) >>>>>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav your >>>>>>>>>>>>> job >>>>>>>>>>>>> is not allowed to run in any queue >>>>>>>>>>>>> Your job 15 >>>>>>>>>>>>> ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") has >>>>>>>>>>>>> been submitted >>>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>>> abhnav >>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>>>> abhnav >>>>>>>>>>>>> localhost >>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>> users mailing list >>>>>>>>>>>>> [email protected] >>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> users mailing list >>>>>>>>>> [email protected] >>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>> >>>>>> >>>> > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
