algorithm default schedule_interval 0:0:15 maxujobs 0 queue_sort_method load job_load_adjustments np_load_avg=0.50 load_adjustment_decay_time 0:7:30 load_formula np_load_avg schedd_job_info true flush_submit_sec 0 flush_finish_sec 0 params none reprioritize_interval 0:0:0 halftime 168 usage_weight_list cpu=1.000000,mem=0.000000,io=0.000000 compensation_factor 5.000000 weight_user 0.250000 weight_project 0.250000 weight_department 0.250000 weight_job 0.250000 weight_tickets_functional 0 weight_tickets_share 0 share_override_tickets TRUE share_functional_shares TRUE max_functional_jobs_to_schedule 200 report_pjob_tickets TRUE max_pending_tasks_per_job 50 halflife_decay_list none policy_hierarchy OFS weight_ticket 0.500000 weight_waiting_time 0.278000 weight_deadline 3600000.000000 weight_urgency 0.500000 weight_priority 0.000000 max_reservation 0 default_duration INFINITY
On Wed, Mar 19, 2014 at 10:27 PM, Reuti <[email protected]> wrote: > You changed the queue setting? > > $ qconf -sq New > > Another place to look to could be: > > $ qconf -ssconf > > -- Reuti > > > Am 19.03.2014 um 17:54 schrieb Abhinav Mittal: > >> Still ...... >> >> abhinav@abhnav:~$ qconf -sql >> New >> abhinav@abhnav:~$ qconf -sel >> abhnav >> localhost >> abhinav@abhnav:~$ qconf -sconf >> #global: >> execd_spool_dir /var/spool/gridengine/execd >> mailer /usr/bin/mail >> xterm /usr/bin/xterm >> load_sensor none >> prolog none >> epilog none >> shell_start_mode posix_compliant >> login_shells bash,sh,ksh,csh,tcsh >> min_uid 0 >> min_gid 0 >> user_lists none >> xuser_lists none >> projects none >> xprojects none >> enforce_project false >> enforce_user auto >> load_report_time 00:00:40 >> max_unheard 00:05:00 >> reschedule_unknown 00:00:00 >> loglevel log_warning >> administrator_mail root >> set_token_cmd none >> pag_cmd none >> token_extend_time none >> shepherd_cmd none >> qmaster_params none >> execd_params none >> reporting_params accounting=true reporting=false \ >> flush_time=00:00:15 joblog=false >> sharelog=00:00:00 >> finished_jobs 100 >> gid_range 65400-65500 >> max_aj_instances 2000 >> max_aj_tasks 75000 >> max_u_jobs 0 >> max_jobs 0 >> auto_user_oticket 0 >> auto_user_fshare 0 >> auto_user_default_project none >> auto_user_delete_time 86400 >> delegated_file_staging false >> reprioritize 0 >> rlogin_daemon /usr/sbin/sshd -i >> rlogin_command /usr/bin/ssh >> qlogin_daemon /usr/sbin/sshd -i >> qlogin_command /usr/share/gridengine/qlogin-wrapper >> rsh_daemon /usr/sbin/sshd -i >> rsh_command /usr/bin/ssh >> jsv_url none >> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >> >> abhinav@abhnav:~$ qsub script.sh >> Unable to run job: warning: abhinav your job is not allowed to run in any >> queue >> Your job 29 ("script.sh") has been submitted. >> Exiting. >> >> On Wed, Mar 19, 2014 at 10:11 PM, Reuti <[email protected]> wrote: >>> Am 19.03.2014 um 16:34 schrieb Abhinav Mittal: >>> >>>> YES abhnav and abhinav are different! >>> >>> Ok. >>> >>>> On Wed, Mar 19, 2014 at 9:00 PM, Reuti <[email protected]> wrote: >>>>>>>>>>> <snip> >>>>>>>>>>> user_lists arusers >>> >>> Why are "arusers" set here? By default this is empty. >>> >>> $ qconf -su arusers >>> >>> Either set it to NONE or attach yourself to the list. >>> >>> -- Reuti >>> >>> >>>>>>>>>>> xuser_lists NONE >>>>>>>>>>> subordinate_list NONE >>>>>>>>>>> complex_values NONE >>>>>>>>>>> projects NONE >>>>>>>>>>> xprojects NONE >>>>>>>>>>> calendar NONE >>>>>>>>>>> initial_state default >>>>>>>>>>> s_rt INFINITY >>>>>>>>>>> h_rt INFINITY >>>>>>>>>>> s_cpu INFINITY >>>>>>>>>>> h_cpu INFINITY >>>>>>>>>>> s_fsize INFINITY >>>>>>>>>>> h_fsize INFINITY >>>>>>>>>>> s_data INFINITY >>>>>>>>>>> h_data INFINITY >>>>>>>>>>> s_stack INFINITY >>>>>>>>>>> h_stack INFINITY >>>>>>>>>>> s_core INFINITY >>>>>>>>>>> h_core INFINITY >>>>>>>>>>> s_rss INFINITY >>>>>>>>>>> h_rss INFINITY >>>>>>>>>>> s_vmem INFINITY >>>>>>>>>>> h_vmem INFINITY >>>>>>>>>>> >>>>>>>>>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]> >>>>>>>>>>> wrote: >>>>>>>>>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: >>>>>>>>>>>> >>>>>>>>>>>>> -------------------------------------------------------------------------------------------------------------------------------- >>>>>>>>>>>>> abhinav@abhnav:~$ qconf -sel >>>>>>>>>>>>> abhnav >>>>>>>>>>>>> abhinav@abhnav:~$ qconf -sql >>>>>>>>>>>>> New >>>>>>>>>>>>> abhinav@abhnav:~$ qconf -sconf >>>>>>>>>>>>> #global: >>>>>>>>>>>>> execd_spool_dir /var/spool/gridengine/execd >>>>>>>>>>>>> mailer /usr/bin/mail >>>>>>>>>>>>> xterm /usr/bin/xterm >>>>>>>>>>>>> load_sensor none >>>>>>>>>>>>> prolog none >>>>>>>>>>>>> epilog none >>>>>>>>>>>>> shell_start_mode posix_compliant >>>>>>>>>>>>> login_shells bash,sh,ksh,csh,tcsh >>>>>>>>>>>>> min_uid 0 >>>>>>>>>>>>> min_gid 0 >>>>>>>>>>>>> user_lists none >>>>>>>>>>>>> xuser_lists none >>>>>>>>>>>>> projects none >>>>>>>>>>>>> xprojects none >>>>>>>>>>>>> enforce_project false >>>>>>>>>>>>> enforce_user auto >>>>>>>>>>>>> load_report_time 00:00:40 >>>>>>>>>>>>> max_unheard 00:05:00 >>>>>>>>>>>>> reschedule_unknown 00:00:00 >>>>>>>>>>>>> loglevel log_warning >>>>>>>>>>>> >>>>>>>>>>>> This I suggest to change to: >>>>>>>>>>>> >>>>>>>>>>>> loglevel log_info >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> administrator_mail root >>>>>>>>>>>>> set_token_cmd none >>>>>>>>>>>>> pag_cmd none >>>>>>>>>>>>> token_extend_time none >>>>>>>>>>>>> shepherd_cmd none >>>>>>>>>>>>> qmaster_params none >>>>>>>>>>>>> execd_params none >>>>>>>>>>>>> reporting_params accounting=true reporting=false \ >>>>>>>>>>>>> flush_time=00:00:15 joblog=false >>>>>>>>>>>>> sharelog=00:00:00 >>>>>>>>>>>>> finished_jobs 100 >>>>>>>>>>>>> gid_range 65400-65500 >>>>>>>>>>>>> max_aj_instances 2000 >>>>>>>>>>>>> max_aj_tasks 75000 >>>>>>>>>>>>> max_u_jobs 0 >>>>>>>>>>>>> max_jobs 0 >>>>>>>>>>>>> auto_user_oticket 0 >>>>>>>>>>>>> auto_user_fshare 0 >>>>>>>>>>>>> auto_user_default_project none >>>>>>>>>>>>> auto_user_delete_time 86400 >>>>>>>>>>>>> delegated_file_staging false >>>>>>>>>>>>> reprioritize 0 >>>>>>>>>>>>> rlogin_daemon /usr/sbin/sshd -i >>>>>>>>>>>>> rlogin_command /usr/bin/ssh >>>>>>>>>>>>> qlogin_daemon /usr/sbin/sshd -i >>>>>>>>>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper >>>>>>>>>>>>> rsh_daemon /usr/sbin/sshd -i >>>>>>>>>>>>> rsh_command /usr/bin/ssh >>>>>>>>>>>> >>>>>>>>>>>> Did you set this up? The default is to use the builtin tools for >>>>>>>>>>>> the commands above. >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> jsv_url none >>>>>>>>>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >>>>>>>>>>>> >>>>>>>>>>>> Fine. >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> abhinav@abhnav:~$ qstat -f >>>>>>>>>>>>> queuename qtype resv/used/tot. load_avg arch >>>>>>>>>>>>> states >>>>>>>>>>>>> --------------------------------------------------------------------------------- >>>>>>>>>>>>> New@abhnav BIP 0/0/1 0.68 >>>>>>>>>>>>> lx26-amd64 >>>>>>>>>>>>> >>>>>>>>>>>>> ############################################################################ >>>>>>>>>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - >>>>>>>>>>>>> PENDING JOBS >>>>>>>>>>>>> ############################################################################ >>>>>>>>>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 >>>>>>>>>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 >>>>>>>>>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 >>>>>>>>>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 >>>>>>>>>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 >>>>>>>>>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 >>>>>>>>>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 >>>>>>>>>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 >>>>>>>>>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 >>>>>>>>>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 >>>>>>>>>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 >>>>>>>>>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 >>>>>>>>>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 >>>>>>>>>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 >>>>>>>>>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 >>>>>>>>>>>> >>>>>>>>>>>> So, what does the queue look like: >>>>>>>>>>>> >>>>>>>>>>>> $ qconf -sq New >>>>>>>>>>>> >>>>>>>>>>>> -- Reuti >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>>> abhnav >>>>>>>>>>>>> >>>>>>>>>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti >>>>>>>>>>>>> <[email protected]> wrote: >>>>>>>>>>>>>> >>>>>>>>>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >>>>>>>>>>>>>> >>>>>>>>>>>>>>> Not working >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>>> localhost >>>>>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>>> abhinav@abhnav:~$ qsub script.sh >>>>>>>>>>>>>>> Unable to run job: warning: abhinav your job is not allowed to >>>>>>>>>>>>>>> run in any queue >>>>>>>>>>>>>>> Your job 18 ("script.sh") has been submitted. >>>>>>>>>>>>>>> Exiting. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Same for qsub -b y as well >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti >>>>>>>>>>>>>>> <[email protected]> wrote: >>>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> I am trying to run a software called >>>>>>>>>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Before looking into any application specific problems: is a >>>>>>>>>>>>>>>> simple script echo'ing "Hello World" working? Can you submit a >>>>>>>>>>>>>>>> binary with `qsub -b y hostname` too? >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> -- Reuti >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> and getting an error "your job is not allowed to run in any >>>>>>>>>>>>>>>>> que". >>>>>>>>>>>>>>>>> submit host : localhost , abhnav >>>>>>>>>>>>>>>>> hostname : abhnav >>>>>>>>>>>>>>>>> Still I am getting this error >>>>>>>>>>>>>>>>> Please help. >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> ----------------------------------------------------------------------------------------------------------------- >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata >>>>>>>>>>>>>>>>> traindir >>>>>>>>>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>>>>>>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday >>>>>>>>>>>>>>>>> March 19 >>>>>>>>>>>>>>>>> 2014, 16:06:01 IST ____ >>>>>>>>>>>>>>>>> Traceback (most recent call last): >>>>>>>>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in >>>>>>>>>>>>>>>>> <module> >>>>>>>>>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', >>>>>>>>>>>>>>>>> 'segway')() >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 3592, in main >>>>>>>>>>>>>>>>> return runner() >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 3429, in __call__ >>>>>>>>>>>>>>>>> self.run(*args, **kwargs) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 3407, in run >>>>>>>>>>>>>>>>> self.run_train() >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 3038, in run_train >>>>>>>>>>>>>>>>> instance_params = run_train_func(num_segs_range) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 3056, in run_train_singlethread >>>>>>>>>>>>>>>>> res = [self.run_train_instance()] >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 2937, in run_train_instance >>>>>>>>>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 2899, in run_train_round >>>>>>>>>>>>>>>>> round_index, **kwargs) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>>>>> line 2770, in queue_train_parallel >>>>>>>>>>>>>>>>> res.queue(restartable_job) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>>>>> line 174, in queue >>>>>>>>>>>>>>>>> self._queue_unconditional(restartable_job) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>>>>> line 164, in _queue_unconditional >>>>>>>>>>>>>>>>> jobid = restartable_job.run() >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>>>>> line 116, in run >>>>>>>>>>>>>>>>> res = self.session.runJob(job_template) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>>>>>>>>>>>>>> line 314, in runJob >>>>>>>>>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>>>>>>>>>>>>>> line 299, in c >>>>>>>>>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>>>>>>>>>>>>>> File >>>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>>>>>>>>>>>>>> line 151, in error_check >>>>>>>>>>>>>>>>> raise _ERRORS[code - 1](error_string) >>>>>>>>>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav >>>>>>>>>>>>>>>>> your job >>>>>>>>>>>>>>>>> is not allowed to run in any queue >>>>>>>>>>>>>>>>> Your job 15 >>>>>>>>>>>>>>>>> ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") has >>>>>>>>>>>>>>>>> been submitted >>>>>>>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>>>>> localhost >>>>>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>>>>> users mailing list >>>>>>>>>>>>>>>>> [email protected] >>>>>>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>> users mailing list >>>>>>>>>>>>>> [email protected] >>>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>>>>> >>>>>>>>>> >>>>>>>> >>>>> >>> > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
