Am 19.03.2014 um 16:34 schrieb Abhinav Mittal: > YES abhnav and abhinav are different!
Ok. > On Wed, Mar 19, 2014 at 9:00 PM, Reuti <[email protected]> wrote: >>>>>>>> <snip> >>>>>>>> user_lists arusers Why are "arusers" set here? By default this is empty. $ qconf -su arusers Either set it to NONE or attach yourself to the list. -- Reuti >>>>>>>> xuser_lists NONE >>>>>>>> subordinate_list NONE >>>>>>>> complex_values NONE >>>>>>>> projects NONE >>>>>>>> xprojects NONE >>>>>>>> calendar NONE >>>>>>>> initial_state default >>>>>>>> s_rt INFINITY >>>>>>>> h_rt INFINITY >>>>>>>> s_cpu INFINITY >>>>>>>> h_cpu INFINITY >>>>>>>> s_fsize INFINITY >>>>>>>> h_fsize INFINITY >>>>>>>> s_data INFINITY >>>>>>>> h_data INFINITY >>>>>>>> s_stack INFINITY >>>>>>>> h_stack INFINITY >>>>>>>> s_core INFINITY >>>>>>>> h_core INFINITY >>>>>>>> s_rss INFINITY >>>>>>>> h_rss INFINITY >>>>>>>> s_vmem INFINITY >>>>>>>> h_vmem INFINITY >>>>>>>> >>>>>>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]> >>>>>>>> wrote: >>>>>>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: >>>>>>>>> >>>>>>>>>> -------------------------------------------------------------------------------------------------------------------------------- >>>>>>>>>> abhinav@abhnav:~$ qconf -sel >>>>>>>>>> abhnav >>>>>>>>>> abhinav@abhnav:~$ qconf -sql >>>>>>>>>> New >>>>>>>>>> abhinav@abhnav:~$ qconf -sconf >>>>>>>>>> #global: >>>>>>>>>> execd_spool_dir /var/spool/gridengine/execd >>>>>>>>>> mailer /usr/bin/mail >>>>>>>>>> xterm /usr/bin/xterm >>>>>>>>>> load_sensor none >>>>>>>>>> prolog none >>>>>>>>>> epilog none >>>>>>>>>> shell_start_mode posix_compliant >>>>>>>>>> login_shells bash,sh,ksh,csh,tcsh >>>>>>>>>> min_uid 0 >>>>>>>>>> min_gid 0 >>>>>>>>>> user_lists none >>>>>>>>>> xuser_lists none >>>>>>>>>> projects none >>>>>>>>>> xprojects none >>>>>>>>>> enforce_project false >>>>>>>>>> enforce_user auto >>>>>>>>>> load_report_time 00:00:40 >>>>>>>>>> max_unheard 00:05:00 >>>>>>>>>> reschedule_unknown 00:00:00 >>>>>>>>>> loglevel log_warning >>>>>>>>> >>>>>>>>> This I suggest to change to: >>>>>>>>> >>>>>>>>> loglevel log_info >>>>>>>>> >>>>>>>>> >>>>>>>>>> administrator_mail root >>>>>>>>>> set_token_cmd none >>>>>>>>>> pag_cmd none >>>>>>>>>> token_extend_time none >>>>>>>>>> shepherd_cmd none >>>>>>>>>> qmaster_params none >>>>>>>>>> execd_params none >>>>>>>>>> reporting_params accounting=true reporting=false \ >>>>>>>>>> flush_time=00:00:15 joblog=false >>>>>>>>>> sharelog=00:00:00 >>>>>>>>>> finished_jobs 100 >>>>>>>>>> gid_range 65400-65500 >>>>>>>>>> max_aj_instances 2000 >>>>>>>>>> max_aj_tasks 75000 >>>>>>>>>> max_u_jobs 0 >>>>>>>>>> max_jobs 0 >>>>>>>>>> auto_user_oticket 0 >>>>>>>>>> auto_user_fshare 0 >>>>>>>>>> auto_user_default_project none >>>>>>>>>> auto_user_delete_time 86400 >>>>>>>>>> delegated_file_staging false >>>>>>>>>> reprioritize 0 >>>>>>>>>> rlogin_daemon /usr/sbin/sshd -i >>>>>>>>>> rlogin_command /usr/bin/ssh >>>>>>>>>> qlogin_daemon /usr/sbin/sshd -i >>>>>>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper >>>>>>>>>> rsh_daemon /usr/sbin/sshd -i >>>>>>>>>> rsh_command /usr/bin/ssh >>>>>>>>> >>>>>>>>> Did you set this up? The default is to use the builtin tools for the >>>>>>>>> commands above. >>>>>>>>> >>>>>>>>> >>>>>>>>>> jsv_url none >>>>>>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >>>>>>>>> >>>>>>>>> Fine. >>>>>>>>> >>>>>>>>> >>>>>>>>>> abhinav@abhnav:~$ qstat -f >>>>>>>>>> queuename qtype resv/used/tot. load_avg arch >>>>>>>>>> states >>>>>>>>>> --------------------------------------------------------------------------------- >>>>>>>>>> New@abhnav BIP 0/0/1 0.68 >>>>>>>>>> lx26-amd64 >>>>>>>>>> >>>>>>>>>> ############################################################################ >>>>>>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - >>>>>>>>>> PENDING JOBS >>>>>>>>>> ############################################################################ >>>>>>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 >>>>>>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 >>>>>>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 >>>>>>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 >>>>>>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 >>>>>>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 >>>>>>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 >>>>>>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 >>>>>>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 >>>>>>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 >>>>>>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 >>>>>>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 >>>>>>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 >>>>>>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 >>>>>>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 >>>>>>>>> >>>>>>>>> So, what does the queue look like: >>>>>>>>> >>>>>>>>> $ qconf -sq New >>>>>>>>> >>>>>>>>> -- Reuti >>>>>>>>> >>>>>>>>> >>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>> abhnav >>>>>>>>>> >>>>>>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]> >>>>>>>>>> wrote: >>>>>>>>>>> >>>>>>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >>>>>>>>>>> >>>>>>>>>>>> Not working >>>>>>>>>>>> >>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>>> abhnav >>>>>>>>>>>> localhost >>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>> abhnav >>>>>>>>>>>> abhinav@abhnav:~$ qsub script.sh >>>>>>>>>>>> Unable to run job: warning: abhinav your job is not allowed to run >>>>>>>>>>>> in any queue >>>>>>>>>>>> Your job 18 ("script.sh") has been submitted. >>>>>>>>>>>> Exiting. >>>>>>>>>>>> >>>>>>>>>>>> Same for qsub -b y as well >>>>>>>>>>>> >>>>>>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti >>>>>>>>>>>> <[email protected]> wrote: >>>>>>>>>>>>> Hi, >>>>>>>>>>>>> >>>>>>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>>>>>>>>>>> >>>>>>>>>>>>>> I am trying to run a software called >>>>>>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>>>>>>>>>>> >>>>>>>>>>>>> Before looking into any application specific problems: is a >>>>>>>>>>>>> simple script echo'ing "Hello World" working? Can you submit a >>>>>>>>>>>>> binary with `qsub -b y hostname` too? >>>>>>>>>>>>> >>>>>>>>>>>>> -- Reuti >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>>> and getting an error "your job is not allowed to run in any que". >>>>>>>>>>>>>> submit host : localhost , abhnav >>>>>>>>>>>>>> hostname : abhnav >>>>>>>>>>>>>> Still I am getting this error >>>>>>>>>>>>>> Please help. >>>>>>>>>>>>>> >>>>>>>>>>>>>> ----------------------------------------------------------------------------------------------------------------- >>>>>>>>>>>>>> >>>>>>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata >>>>>>>>>>>>>> traindir >>>>>>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>>>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday March >>>>>>>>>>>>>> 19 >>>>>>>>>>>>>> 2014, 16:06:01 IST ____ >>>>>>>>>>>>>> Traceback (most recent call last): >>>>>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in >>>>>>>>>>>>>> <module> >>>>>>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')() >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 3592, in main >>>>>>>>>>>>>> return runner() >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 3429, in __call__ >>>>>>>>>>>>>> self.run(*args, **kwargs) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 3407, in run >>>>>>>>>>>>>> self.run_train() >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 3038, in run_train >>>>>>>>>>>>>> instance_params = run_train_func(num_segs_range) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 3056, in run_train_singlethread >>>>>>>>>>>>>> res = [self.run_train_instance()] >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 2937, in run_train_instance >>>>>>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 2899, in run_train_round >>>>>>>>>>>>>> round_index, **kwargs) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>>>>> line 2770, in queue_train_parallel >>>>>>>>>>>>>> res.queue(restartable_job) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>> line 174, in queue >>>>>>>>>>>>>> self._queue_unconditional(restartable_job) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>> line 164, in _queue_unconditional >>>>>>>>>>>>>> jobid = restartable_job.run() >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>>>>> line 116, in run >>>>>>>>>>>>>> res = self.session.runJob(job_template) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>>>>>>>>>>> line 314, in runJob >>>>>>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>>>>>>>>>>> line 299, in c >>>>>>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>>>>>>>>>>> File >>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>>>>>>>>>>> line 151, in error_check >>>>>>>>>>>>>> raise _ERRORS[code - 1](error_string) >>>>>>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav >>>>>>>>>>>>>> your job >>>>>>>>>>>>>> is not allowed to run in any queue >>>>>>>>>>>>>> Your job 15 >>>>>>>>>>>>>> ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") has >>>>>>>>>>>>>> been submitted >>>>>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>>>>> abhnav >>>>>>>>>>>>>> localhost >>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>> users mailing list >>>>>>>>>>>>>> [email protected] >>>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> users mailing list >>>>>>>>>>> [email protected] >>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>> >>>>>>> >>>>> >> _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
