which version of Open MPI is this?
Thanks
Edgar
On 2/10/2016 4:13 AM, Delphine Ramalingom wrote:
Hello,
I try to compile a parallel version of hdf5.
I have error messages when I check with openmpi.
Support on HDF5 told me that the errors seem related to the new ompio
implementation inside
open MPI for MPI-I/O. He suggests that I talk to the OMPI mailing list
to resolve these errors.
For information, my version of openmpi is : gcc (GCC) 4.8.2
mpicc --showme
gcc -I/programs/Compilateurs2/usr/include -pthread -Wl,-rpath
-Wl,/programs/Compilateurs2/usr/lib -Wl,--enable-new-dtags
-L/programs/Compilateurs2/usr/lib -lmpi
Errors are :
.../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error:
/programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so:
undefined symbol: ompi_io_ompio_decode_datatype
.../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error:
/programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so:
undefined symbol: ompi_io_ompio_decode_datatype
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
.../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error:
/programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so:
undefined symbol: ompi_io_ompio_set_aggregator_props
.../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error:
/programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so:
undefined symbol: ompi_io_ompio_set_aggregator_props
.../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error:
/programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so:
undefined symbol: ompi_io_ompio_set_aggregator_props
Thanks in advance for your help.
Regards
Delphine
--
<http://www.univ-reunion.fr> *Delphine Ramalingom Barbary | Ingénieure
en Calcul Scientifique *
Direction des Usages du Numérique (DUN)
Centre de Développement du Calcul Scientifique
TEL : 02 62 93 84 87- FAX : 02 62 93 81 06
--
Edgar Gabriel
Associate Professor
Parallel Software Technologies Lab http://pstl.cs.uh.edu
Department of Computer Science University of Houston
Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
--
